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Lj2g3v1984080.1

Overview

Field Value
Gene ID Lj2g3v1984080
Transcript ID Lj2g3v1984080.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: cysteine desulfurase 1, mitochondrial-like isoform 1 [Glycine max] gi|356497029|ref|XP_003517367.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11601
49 458 410 8.90E-269 –
PANTHER
PTHR11601:SF34
49 458 410 8.90E-269 –
Hamap
MF_00331
56 449 394 52.109
IPR010240
TIGRFAM
TIGR02006
58 458 401 1.60E-196
IPR010240
PIRSF
PIRSF005572
58 438 381 6.70E-132
IPR016454
SUPERFAMILY
SSF53383
59 445 387 4.12E-106
IPR015424
Pfam
PF00266
61 422 362 1.30E-85
IPR000192
Gene3D
G3DSA:3.40.640.10
71 306 236 8.60E-100
IPR015421
Gene3D
G3DSA:3.90.1150.10
307 426 120 1.80E-48
IPR015422

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003824
Molecular function Catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
Subterm of
GO:0030170
Molecular function Pyridoxal phosphate binding Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
Subterm of
GO:0031071
Molecular function Cysteine desulfurase activity Catalysis of the reaction: L-cysteine + [enzyme]-cysteine = L-alanine + [enzyme]-S-sulfanylcysteine.
Subterm of
GO:0044571
Biological process [2Fe-2S] cluster assembly The incorporation of two iron atoms and two sulfur atoms into an iron-sulfur cluster.
Subterm of

Genome browser

LORE1 insertions 2

Expression data

Expression pattern

Expression pattern of Lj2g3v1984080.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v1984080.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.