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Lj2g3v2083350.1

Overview

Field Value
Gene ID Lj2g3v2083350
Transcript ID Lj2g3v2083350.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ribosome biogenesis ATPase RIX7-like isoform X2 [Cicer arietinum] gi|502159822|ref|XP_004511542.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23074
1 222 222 9.20E-235 –
PANTHER
PTHR23074:SF90
1 222 222 9.20E-235 –
Gene3D
G3DSA:3.40.50.300
2 162 161 1.50E-52
IPR027417
SUPERFAMILY
SSF52540
2 211 210 1.45E-55
IPR027417
SMART
SM00382
17 154 138 1.20E-20
IPR003593
CDD
cd00009
19 152 134 1.77E-24 –
Pfam
PF00004
21 151 131 6.80E-39
IPR003959
ProSitePatterns
PS00674
124 143 20 –
IPR003960
Gene3D
G3DSA:1.10.8.60
163 208 46 2.50E-18 –
MobiDBLite
mobidb-lite
226 252 27 – –
PANTHER
PTHR23074
250 312 63 9.20E-235 –
PANTHER
PTHR23074:SF90
250 312 63 9.20E-235 –
Gene3D
G3DSA:1.10.8.60
260 283 24 2.50E-18 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj2g3v2083350.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v2083350.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.