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| Field | Value |
|---|---|
| Gene ID | Lj2g3v2554840 |
| Transcript ID | Lj2g3v2554840.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357491947|ref|XP_003616261.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 12 | 12 | – | – | |
| ProSiteProfiles | 1 | 20 | 20 | 5 | – | |
| Phobius | 1 | 27 | 27 | – | – | |
| PANTHER | 11 | 48 | 38 | 6.80E-139 | – | |
| Phobius | 13 | 20 | 8 | – | – | |
| Phobius | 21 | 27 | 7 | – | – | |
| Phobius | 28 | 452 | 425 | – | – | |
| PANTHER | 70 | 128 | 59 | 6.80E-139 | – | |
| ProSiteProfiles | 157 | 191 | 35 | 8.089 | ||
| Pfam | 161 | 188 | 28 | 0.28 | ||
| PANTHER | 162 | 443 | 282 | 6.80E-139 | – | |
| ProSiteProfiles | 192 | 226 | 35 | 5.448 | ||
| Pfam | 223 | 253 | 31 | 1.10E-05 | ||
| ProSiteProfiles | 227 | 261 | 35 | 10.972 | ||
| TIGRFAM | 230 | 262 | 33 | 8.90E-07 | ||
| Pfam | 259 | 290 | 32 | 1.10E-10 | ||
| ProSiteProfiles | 262 | 296 | 35 | 11.542 | ||
| TIGRFAM | 264 | 298 | 35 | 2.10E-08 | ||
| Pfam | 296 | 345 | 50 | 1.00E-17 | ||
| ProSiteProfiles | 297 | 331 | 35 | 13.581 | ||
| TIGRFAM | 299 | 332 | 34 | 3.80E-10 | ||
| ProSiteProfiles | 332 | 366 | 35 | 11.575 | ||
| TIGRFAM | 334 | 367 | 34 | 3.90E-07 | ||
| Pfam | 366 | 415 | 50 | 2.20E-21 | ||
| ProSiteProfiles | 367 | 401 | 35 | 14.732 | ||
| TIGRFAM | 369 | 402 | 34 | 2.30E-11 | ||
| ProSiteProfiles | 402 | 436 | 35 | 12.43 | ||
| TIGRFAM | 404 | 438 | 35 | 6.20E-10 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj2g3v2554840.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v2554840.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.