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Lj2g3v3058550.1

Overview

Field Value
Gene ID Lj2g3v3058550
Transcript ID Lj2g3v3058550.1
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: chromodomain-helicase-DNA-binding protein 2-like [Glycine max] gi|356554106|ref|XP_003545390.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10799:SF70
20 603 584 2.00E-283 –
PANTHER
PTHR10799
20 603 584 2.00E-283 –
SUPERFAMILY
SSF52540
23 255 233 6.15E-54
IPR027417
SMART
SM00487
30 229 200 1.80E-35
IPR014001
Gene3D
G3DSA:3.40.50.300
31 215 185 6.00E-27
IPR027417
ProSiteProfiles
PS51192
46 218 173 22.763
IPR014001
Pfam
PF00176
50 322 273 5.40E-66
IPR000330
CDD
cd00046
54 200 147 6.52E-21 –
SUPERFAMILY
SSF52540
258 539 282 1.06E-68
IPR027417
Gene3D
G3DSA:3.40.50.300
340 501 162 1.60E-27
IPR027417
CDD
cd00079
345 472 128 1.84E-27 –
Pfam
PF00271
351 464 114 9.00E-20
IPR001650
ProSiteProfiles
PS51194
354 505 152 19.193
IPR001650
SMART
SM00490
380 464 85 5.20E-25
IPR001650
Coils
Coil
494 514 21 – –
Coils
Coil
548 568 21 – –
MobiDBLite
mobidb-lite
625 651 27 – –
PANTHER
PTHR10799:SF70
875 980 106 2.00E-283 –
PANTHER
PTHR10799
875 980 106 2.00E-283 –
SMART
SM01176
932 1037 106 1.30E-29
IPR025260
Pfam
PF13907
943 1036 94 1.90E-17
IPR025260
MobiDBLite
mobidb-lite
1044 1068 25 – –
MobiDBLite
mobidb-lite
1080 1166 87 – –
PANTHER
PTHR10799:SF70
1100 1119 20 2.00E-283 –
PANTHER
PTHR10799
1100 1119 20 2.00E-283 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 14

Expression data

Expression pattern

Expression pattern of Lj2g3v3058550.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj2g3v3058550.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.