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| Field | Value |
|---|---|
| Gene ID | Lj2g3v3261220 |
| Transcript ID | Lj2g3v3261220.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g06920-like [Glycine max] gi|356499433|ref|XP_003518545.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 92 | 114 | 23 | 0 | – | |
| PANTHER | 92 | 114 | 23 | 0 | – | |
| ProSiteProfiles | 137 | 171 | 35 | 8.583 | ||
| Pfam | 160 | 218 | 59 | 4.80E-06 | ||
| ProSiteProfiles | 172 | 206 | 35 | 8.912 | ||
| PANTHER | 186 | 557 | 372 | 0 | – | |
| PANTHER | 186 | 557 | 372 | 0 | – | |
| ProSiteProfiles | 207 | 241 | 35 | 8.616 | ||
| TIGRFAM | 210 | 242 | 33 | 2.30E-04 | ||
| ProSiteProfiles | 242 | 276 | 35 | 9.986 | ||
| TIGRFAM | 245 | 277 | 33 | 1.10E-05 | ||
| Pfam | 246 | 273 | 28 | 4.90E-04 | ||
| Pfam | 277 | 325 | 49 | 2.10E-16 | ||
| ProSiteProfiles | 277 | 311 | 35 | 12.485 | ||
| TIGRFAM | 279 | 312 | 34 | 3.90E-10 | ||
| ProSiteProfiles | 312 | 346 | 35 | 11.389 | ||
| TIGRFAM | 314 | 342 | 29 | 2.10E-06 | ||
| Gene3D | 326 | 433 | 108 | 7.50E-15 | ||
| Pfam | 346 | 393 | 48 | 4.40E-10 | ||
| ProSiteProfiles | 347 | 381 | 35 | 11.74 | ||
| TIGRFAM | 349 | 382 | 34 | 9.10E-07 | ||
| SUPERFAMILY | 381 | 443 | 63 | 9.48E-10 | ||
| ProSiteProfiles | 382 | 412 | 31 | 10.534 | ||
| TIGRFAM | 385 | 411 | 27 | 1.00E-06 | ||
| Pfam | 415 | 464 | 50 | 7.60E-16 | ||
| ProSiteProfiles | 416 | 450 | 35 | 12.288 | ||
| TIGRFAM | 419 | 452 | 34 | 2.70E-08 | ||
| ProSiteProfiles | 451 | 485 | 35 | 9.964 | ||
| TIGRFAM | 453 | 487 | 35 | 5.40E-06 | ||
| Pfam | 485 | 531 | 47 | 3.10E-11 | ||
| ProSiteProfiles | 486 | 520 | 35 | 12.266 | ||
| SUPERFAMILY | 487 | 562 | 76 | 9.48E-10 | ||
| TIGRFAM | 488 | 522 | 35 | 6.70E-08 | ||
| Gene3D | 489 | 584 | 96 | 7.50E-15 | ||
| ProSiteProfiles | 521 | 555 | 35 | 12.77 | ||
| TIGRFAM | 523 | 556 | 34 | 2.10E-08 | ||
| Pfam | 555 | 604 | 50 | 2.10E-09 | ||
| ProSiteProfiles | 556 | 590 | 35 | 9.58 | ||
| TIGRFAM | 561 | 592 | 32 | 5.60E-05 | ||
| ProSiteProfiles | 591 | 625 | 35 | 10.863 | ||
| TIGRFAM | 594 | 626 | 33 | 4.60E-07 | ||
| ProSiteProfiles | 626 | 660 | 35 | 14.359 | ||
| Pfam | 626 | 674 | 49 | 1.30E-17 | ||
| PANTHER | 628 | 807 | 180 | 0 | – | |
| PANTHER | 628 | 807 | 180 | 0 | – | |
| TIGRFAM | 629 | 661 | 33 | 6.00E-10 | ||
| ProSiteProfiles | 661 | 695 | 35 | 10.26 | ||
| TIGRFAM | 663 | 689 | 27 | 8.60E-04 | ||
| Pfam | 696 | 744 | 49 | 4.00E-11 | ||
| ProSiteProfiles | 696 | 730 | 35 | 12.255 | ||
| TIGRFAM | 698 | 732 | 35 | 4.90E-07 | ||
| SUPERFAMILY | 704 | 827 | 124 | 9.48E-10 | ||
| ProSiteProfiles | 731 | 765 | 35 | 10.95 | ||
| Gene3D | 732 | 827 | 96 | 7.50E-15 | ||
| TIGRFAM | 733 | 766 | 34 | 1.00E-07 | ||
| ProSiteProfiles | 766 | 800 | 35 | 12.693 | ||
| TIGRFAM | 768 | 801 | 34 | 2.40E-10 | ||
| Pfam | 768 | 814 | 47 | 3.60E-17 | ||
| ProSiteProfiles | 801 | 835 | 35 | 12.562 | ||
| TIGRFAM | 803 | 836 | 34 | 2.70E-09 | ||
| Pfam | 835 | 884 | 50 | 2.90E-08 | ||
| ProSiteProfiles | 836 | 870 | 35 | 10.369 | ||
| TIGRFAM | 839 | 869 | 31 | 3.90E-04 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj2g3v3261220.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v3261220.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.