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Lj3g3v0030640.1

Overview

Field Value
Gene ID Lj3g3v0030640
Transcript ID Lj3g3v0030640.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: BRCA1-associated protein-like [Cicer arietinum] gi|502080643|ref|XP_004486630.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 22 22 – –
PANTHER
PTHR24007
25 467 443 1.00E-218 –
ProDom
PD017029
31 157 127 2.00E-43
IPR011422
Pfam
PF07576
59 155 97 9.10E-37
IPR011422
CDD
cd12437
66 147 82 2.15E-36 –
Gene3D
G3DSA:3.30.40.10
155 197 43 3.30E-09
IPR013083
CDD
cd00162
167 208 42 7.88E-08 –
Pfam
PF13639
167 208 42 2.20E-08
IPR001841
ProSiteProfiles
PS50089
168 208 41 12.622
IPR001841
SMART
SM00184
168 207 40 3.90E-06
IPR001841
SUPERFAMILY
SSF57850
184 283 100 1.70E-25 –
Gene3D
G3DSA:3.30.40.10
198 293 96 3.30E-24
IPR013083
ProSiteProfiles
PS50271
217 278 62 19.654
IPR001607
SMART
SM00290
218 267 50 2.10E-22
IPR001607
Pfam
PF02148
219 278 60 2.90E-18
IPR001607
Coils
Coil
329 356 28 – –
Coils
Coil
370 397 28 – –
Coils
Coil
406 426 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0008270
Molecular function Zinc ion binding Interacting selectively and non-covalently with zinc (Zn) ions.
Subterm of

Genome browser

LORE1 insertions 10

Expression data

Expression pattern

Expression pattern of Lj3g3v0030640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0030640.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.