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Lj3g3v0095850.1

Overview

Field Value
Gene ID Lj3g3v0095850
Transcript ID Lj3g3v0095850.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: transcription initiation factor IIB-like [Fragaria vesca subsp]. vesca] gi|470137151|ref|XP_004304334.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11618
1 311 311 1.30E-218
IPR000812
PANTHER
PTHR11618:SF27
1 311 311 1.30E-218 –
ProSiteProfiles
PS51134
1 34 34 9.165
IPR013137
SUPERFAMILY
SSF57783
4 50 47 1.45E-13 –
Gene3D
G3DSA:2.20.25.10
4 50 47 1.30E-20 –
Pfam
PF08271
5 47 43 6.20E-15
IPR013137
PRINTS
PR00685
19 39 21 5.50E-66
IPR000812
PRINTS
PR00685
41 54 14 5.50E-66
IPR000812
PRINTS
PR00685
55 76 22 5.50E-66
IPR000812
SUPERFAMILY
SSF47954
105 196 92 1.29E-21
IPR013763
Gene3D
G3DSA:1.10.472.10
108 215 108 4.10E-32
IPR013763
SMART
SM00385
110 192 83 8.60E-08
IPR013763
CDD
cd00043
112 185 74 1.09E-11 –
Pfam
PF00382
112 176 65 3.80E-18
IPR013150
ProSitePatterns
PS00782
144 159 16 –
IPR023486
PRINTS
PR00685
152 171 20 5.50E-66
IPR000812
PRINTS
PR00685
179 194 16 5.50E-66
IPR000812
SUPERFAMILY
SSF47954
207 308 102 1.02E-24
IPR013763
CDD
cd00043
207 289 83 1.94E-06 –
SMART
SM00385
211 290 80 1.30E-04
IPR013763
PRINTS
PR00685
212 230 19 5.50E-66
IPR000812
Pfam
PF00382
214 281 68 6.00E-08
IPR013150
Gene3D
G3DSA:1.10.472.10
216 302 87 1.10E-22
IPR013763
PRINTS
PR00685
244 260 17 5.50E-66
IPR000812
PRINTS
PR00685
276 290 15 5.50E-66
IPR000812

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006355
Biological process Regulation of transcription, DNA-templated Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
Subterm of
Regulates
GO:0017025
Molecular function TBP-class protein binding Interacting selectively and non-covalently with a member of the class of TATA-binding proteins (TBP), including any of the TBP-related factors (TRFs).
Subterm of
GO:0070897
Biological process Transcription preinitiation complex assembly The aggregation, arrangement and bonding together of proteins on promoter DNA to form the transcriptional preinitiation complex (PIC), required for transcription.
Subterm of
Part of

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj3g3v0095850.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0095850.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.