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Lj3g3v0271550.1

Overview

Field Value
Gene ID Lj3g3v0271550
Transcript ID Lj3g3v0271550.1
Lotus japonicus genome version MG20 v3.0
Description Activating signal cointegrator 1 complex subunit [Medicago truncatula] gi|357454839|ref|XP_003597700.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR13360:SF1
45 164 120 9.70E-131 –
PANTHER
PTHR13360
45 164 120 9.70E-131 –
SMART
SM00322
48 116 69 0.0079
IPR004087
Gene3D
G3DSA:3.30.1370.10
49 115 67 1.50E-08
IPR004088
ProSiteProfiles
PS50084
49 111 63 10.127
IPR004088
SUPERFAMILY
SSF54791
50 119 70 9.06E-11
IPR004088
CDD
cd02394
51 112 62 2.20E-09 –
Pfam
PF00013
58 113 56 5.50E-08
IPR004088
Pfam
PF10469
126 405 280 2.60E-71
IPR019510
PANTHER
PTHR13360:SF1
220 412 193 9.70E-131 –
PANTHER
PTHR13360
220 412 193 9.70E-131 –
Gene3D
G3DSA:3.90.1140.10
234 405 172 4.60E-13
IPR009097
SUPERFAMILY
SSF55144
234 405 172 1.70E-05
IPR009097

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of

Genome browser

LORE1 insertions 21

Expression data

Expression pattern

Expression pattern of Lj3g3v0271550.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0271550.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.