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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0381620 |
| Transcript ID | Lj3g3v0381620.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like [Glycine max] gi|356497651|ref|XP_003517673.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 19 | 19 | – | – | |
| Phobius | 20 | 41 | 22 | – | – | |
| Phobius | 42 | 125 | 84 | – | – | |
| Phobius | 126 | 147 | 22 | – | – | |
| Phobius | 148 | 621 | 474 | – | – | |
| ProSiteProfiles | 173 | 207 | 35 | 8.024 | ||
| Pfam | 176 | 199 | 24 | 0.28 | ||
| PANTHER | 180 | 611 | 432 | 2.10E-191 | – | |
| PANTHER | 180 | 611 | 432 | 2.10E-191 | – | |
| ProSiteProfiles | 208 | 242 | 35 | 6.204 | ||
| Pfam | 270 | 300 | 31 | 1.40E-06 | ||
| ProSiteProfiles | 274 | 308 | 35 | 7.815 | ||
| Gene3D | 303 | 448 | 146 | 1.20E-04 | ||
| Pfam | 309 | 357 | 49 | 9.20E-17 | ||
| ProSiteProfiles | 309 | 343 | 35 | 11.937 | ||
| TIGRFAM | 312 | 345 | 34 | 3.90E-07 | ||
| ProSiteProfiles | 344 | 378 | 35 | 12.836 | ||
| TIGRFAM | 346 | 379 | 34 | 7.20E-09 | ||
| ProSiteProfiles | 379 | 417 | 39 | 7.432 | ||
| Pfam | 417 | 466 | 50 | 1.20E-09 | ||
| ProSiteProfiles | 418 | 452 | 35 | 9.668 | ||
| TIGRFAM | 421 | 453 | 33 | 8.00E-06 | ||
| ProSiteProfiles | 453 | 487 | 35 | 10.15 | ||
| ProSiteProfiles | 488 | 520 | 33 | 6.939 | ||
| ProSiteProfiles | 535 | 569 | 35 | 13.011 | ||
| TIGRFAM | 537 | 571 | 35 | 1.30E-09 | ||
| Pfam | 540 | 578 | 39 | 2.00E-12 | ||
| ProSiteProfiles | 570 | 604 | 35 | 9.186 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v0381620.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0381620.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.