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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0381680 |
| Transcript ID | Lj3g3v0381680.1 |
| Related isoforms 4 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g39710-like [Glycine max] gi|356497651|ref|XP_003517673.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 136 | 170 | 35 | 8.024 | ||
| Pfam | 139 | 162 | 24 | 0.29 | ||
| PANTHER | 143 | 633 | 491 | 7.00E-226 | – | |
| PANTHER | 143 | 633 | 491 | 7.00E-226 | – | |
| ProSiteProfiles | 171 | 205 | 35 | 6.204 | ||
| Pfam | 233 | 263 | 31 | 1.40E-06 | ||
| ProSiteProfiles | 237 | 271 | 35 | 7.815 | ||
| Gene3D | 266 | 411 | 146 | 1.20E-04 | ||
| Pfam | 272 | 320 | 49 | 9.60E-17 | ||
| ProSiteProfiles | 272 | 306 | 35 | 11.937 | ||
| TIGRFAM | 275 | 308 | 34 | 4.00E-07 | ||
| SUPERFAMILY | 305 | 485 | 181 | 4.97E-05 | – | |
| ProSiteProfiles | 307 | 341 | 35 | 12.836 | ||
| TIGRFAM | 309 | 342 | 34 | 7.50E-09 | ||
| ProSiteProfiles | 342 | 380 | 39 | 7.432 | ||
| Pfam | 380 | 428 | 49 | 5.60E-09 | ||
| ProSiteProfiles | 381 | 415 | 35 | 9.668 | ||
| TIGRFAM | 384 | 416 | 33 | 8.40E-06 | ||
| ProSiteProfiles | 416 | 450 | 35 | 10.15 | ||
| Pfam | 450 | 496 | 47 | 6.80E-08 | ||
| ProSiteProfiles | 451 | 486 | 36 | 8.616 | ||
| ProSiteProfiles | 487 | 521 | 35 | 8.429 | ||
| TIGRFAM | 490 | 523 | 34 | 2.50E-04 | ||
| Pfam | 521 | 570 | 50 | 7.80E-16 | ||
| ProSiteProfiles | 522 | 556 | 35 | 10.95 | ||
| TIGRFAM | 524 | 557 | 34 | 1.70E-05 | ||
| ProSiteProfiles | 557 | 591 | 35 | 13.011 | ||
| TIGRFAM | 559 | 593 | 35 | 1.30E-09 | ||
| Pfam | 580 | 622 | 43 | 1.20E-05 | ||
| ProSiteProfiles | 592 | 626 | 35 | 9.186 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v0381680.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0381680.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.