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Lj3g3v0462070.1

Overview

Field Value
Gene ID Lj3g3v0462070
Transcript ID Lj3g3v0462070.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: eukaryotic translation initiation factor 2D-like [Glycine max] gi|356544210|ref|XP_003540547.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 28 28 – –
PANTHER
PTHR12217:SF4
2 607 606 2.00E-240 –
PANTHER
PTHR12217
2 607 606 2.00E-240 –
CDD
cd11610
9 81 73 1.69E-18 –
ProSiteProfiles
PS50890
93 174 82 12.399
IPR002478
SUPERFAMILY
SSF88697
103 179 77 9.94E-12
IPR015947
Gene3D
G3DSA:2.30.130.10
103 179 77 2.80E-14
IPR015947
MobiDBLite
mobidb-lite
203 259 57 – –
MobiDBLite
mobidb-lite
380 403 24 – –
SUPERFAMILY
SSF47592
404 505 102 1.13E-13
IPR003121
Gene3D
G3DSA:1.10.245.10
407 472 66 4.40E-04
IPR003121
SUPERFAMILY
SSF55159
488 605 118 4.45E-24
IPR001950
Gene3D
G3DSA:3.30.780.10
516 604 89 2.60E-09
IPR001950
Pfam
PF01253
520 597 78 3.10E-22
IPR001950
ProSiteProfiles
PS50296
522 594 73 18.328
IPR001950
CDD
cd11608
522 603 82 2.67E-33 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0003743
Molecular function Translation initiation factor activity Functions in the initiation of ribosome-mediated translation of mRNA into a polypeptide.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0006413
Biological process Translational initiation The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
Subterm of
Part of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj3g3v0462070.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0462070.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.