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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0462200 |
| Transcript ID | Lj3g3v0462200.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | RING finger family protein [Medicago truncatula] gi|357470167|ref|XP_003605368.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 16 | 16 | – | – | |
| SignalP | 1 | 33 | 33 | – | – | |
| Phobius | 1 | 33 | 33 | – | – | |
| Phobius | 17 | 28 | 12 | – | – | |
| Phobius | 29 | 33 | 5 | – | – | |
| Phobius | 34 | 56 | 23 | – | – | |
| PANTHER | 47 | 237 | 191 | 5.00E-83 | – | |
| PANTHER | 47 | 237 | 191 | 5.00E-83 | – | |
| Phobius | 57 | 82 | 26 | – | – | |
| TMHMM | 61 | 83 | 23 | – | – | |
| Phobius | 83 | 275 | 193 | – | – | |
| SUPERFAMILY | 129 | 192 | 64 | 2.00E-20 | – | |
| Gene3D | 141 | 190 | 50 | 2.10E-18 | ||
| CDD | 144 | 187 | 44 | 3.21E-11 | – | |
| Pfam | 144 | 187 | 44 | 1.60E-13 | ||
| SMART | 145 | 186 | 42 | 6.60E-06 | ||
| ProSiteProfiles | 145 | 187 | 43 | 12.593 | ||
| MobiDBLite | 202 | 237 | 36 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj3g3v0462200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0462200.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.