Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj3g3v0596290.1

Overview

Field Value
Gene ID Lj3g3v0596290
Transcript ID Lj3g3v0596290.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: pentatricopeptide repeat-containing protein At1g02150-like [Glycine max] gi|356503236|ref|XP_003520417.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR24015
2 406 405 1.20E-221 –
PANTHER
PTHR24015:SF27
2 406 405 1.20E-221 –
ProSiteProfiles
PS51375
51 85 35 8.462
IPR002885
Pfam
PF01535
54 82 29 0.042
IPR002885
ProSiteProfiles
PS51375
86 120 35 7.848
IPR002885
TIGRFAM
TIGR00756
90 121 32 6.50E-04
IPR002885
Pfam
PF13812
109 164 56 2.80E-04
IPR002885
Gene3D
G3DSA:1.25.40.10
131 325 195 3.00E-10
IPR011990
ProSiteProfiles
PS51375
154 184 31 7.103
IPR002885
SUPERFAMILY
SSF48452
155 325 171 7.59E-07
IPR011990
ProSiteProfiles
PS51375
224 258 35 5.437
IPR002885
ProSiteProfiles
PS51375
259 293 35 9.109
IPR002885
TIGRFAM
TIGR00756
264 294 31 7.80E-05
IPR002885
Pfam
PF01535
264 290 27 0.0052
IPR002885
ProSiteProfiles
PS51375
294 329 36 5.985
IPR002885

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj3g3v0596290.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0596290.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.