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Lj3g3v0618160.1

Overview

Field Value
Gene ID Lj3g3v0618160
Transcript ID Lj3g3v0618160.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: dynamin-related protein 1E-like isoform 1 [Glycine max] gi|356520720|ref|XP_003529008.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
ProSiteProfiles
PS51718
1 209 209 40.433
IPR030381
PANTHER
PTHR11566:SF80
1 535 535 0 –
SMART
SM00053
1 160 160 5.10E-35
IPR001401
PANTHER
PTHR11566
1 535 535 0
IPR022812
SUPERFAMILY
SSF52540
2 217 216 3.94E-47
IPR027417
Gene3D
G3DSA:3.40.50.300
2 218 217 1.40E-90
IPR027417
CDD
cd08771
2 209 208 4.62E-89 –
Pfam
PF00350
4 121 118 3.30E-30
IPR022812
PRINTS
PR00195
41 58 18 1.40E-33
IPR022812
PRINTS
PR00195
91 109 19 1.40E-33
IPR022812
PRINTS
PR00195
110 126 17 1.40E-33
IPR022812
Pfam
PF01031
131 398 268 3.50E-63
IPR000375
PRINTS
PR00195
133 152 20 1.40E-33
IPR022812
MobiDBLite
mobidb-lite
409 437 29 – –
SMART
SM00302
440 533 94 3.90E-33
IPR003130
Pfam
PF02212
442 533 92 8.70E-25
IPR003130
ProSiteProfiles
PS51388
445 537 93 21.281
IPR020850

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003924
Molecular function GTPase activity Catalysis of the reaction: GTP + H2O = GDP + phosphate.
Subterm of
GO:0005525
Molecular function GTP binding Interacting selectively and non-covalently with GTP, guanosine triphosphate.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj3g3v0618160.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0618160.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.