Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj3g3v0807650.1

Overview

Field Value
Gene ID Lj3g3v0807650
Transcript ID Lj3g3v0807650.1
Lotus japonicus genome version MG20 v3.0
Description Dimethyladenosine transferase [Medicago truncatula] gi|357455725|ref|XP_003598143.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 22 22 – –
Gene3D
G3DSA:3.40.50.150
19 209 191 4.60E-68
IPR029063
PANTHER
PTHR11727
19 255 237 6.40E-142
IPR001737
SUPERFAMILY
SSF53335
20 252 233 2.00E-66
IPR029063
Hamap
MF_00607
23 251 229 40.064
IPR011530
TIGRFAM
TIGR00755
24 338 315 2.30E-75
IPR011530
Pfam
PF00398
24 251 228 1.90E-62
IPR001737
ProSiteProfiles
PS51689
25 274 250 65.758
IPR001737
SMART
SM00650
39 208 170 5.30E-87
IPR020598
ProSitePatterns
PS01131
55 82 28 –
IPR020596
CDD
cd02440
55 138 84 2.46E-09 –
PANTHER
PTHR11727
301 349 49 6.40E-142
IPR001737

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000154
Biological process RRNA modification The covalent alteration of one or more nucleotides within an rRNA molecule to produce an rRNA molecule with a sequence that differs from that coded genetically.
Subterm of
GO:0000179
Molecular function RRNA (adenine-N6,N6-)-dimethyltransferase activity Catalysis of the dimethylation two adjacent A residues in the loop closing the 3'-terminal stem of the 18S rRNA, using S-adenosyl-L-methionine as a methyl donor.
Subterm of
GO:0006364
Biological process RRNA processing Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
Subterm of
Part of
GO:0008649
Molecular function RRNA methyltransferase activity Catalysis of the transfer of a methyl group from S-adenosyl-L-methionine to a nucleoside residue in an rRNA molecule.
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj3g3v0807650.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0807650.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.