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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0807680 |
| Transcript ID | Lj3g3v0807680.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable cellulose synthase A catalytic subunit 3 [UDP]-forming] gi|502127241|ref|XP_004499618.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 233 | 233 | – | – | |
| SUPERFAMILY | 25 | 111 | 87 | 1.88E-32 | – | |
| Gene3D | 25 | 113 | 89 | 4.50E-30 | ||
| Pfam | 31 | 105 | 75 | 5.10E-36 | ||
| ProSiteProfiles | 39 | 85 | 47 | 8.919 | ||
| PANTHER | 76 | 623 | 548 | 0 | – | |
| PANTHER | 76 | 623 | 548 | 0 | – | |
| Phobius | 234 | 252 | 19 | – | – | |
| TMHMM | 234 | 256 | 23 | – | – | |
| Phobius | 253 | 263 | 11 | – | – | |
| TMHMM | 263 | 282 | 20 | – | – | |
| Phobius | 264 | 283 | 20 | – | – | |
| Phobius | 284 | 827 | 544 | – | – | |
| Pfam | 317 | 1004 | 688 | 0 | ||
| SUPERFAMILY | 331 | 381 | 51 | 1.10E-07 | ||
| Coils | 415 | 435 | 21 | – | – | |
| SUPERFAMILY | 485 | 571 | 87 | 1.10E-07 | ||
| SUPERFAMILY | 618 | 642 | 25 | 1.10E-07 | ||
| PANTHER | 671 | 1003 | 333 | 0 | – | |
| PANTHER | 671 | 1003 | 333 | 0 | – | |
| SUPERFAMILY | 749 | 805 | 57 | 1.10E-07 | ||
| TMHMM | 826 | 848 | 23 | – | – | |
| Phobius | 828 | 848 | 21 | – | – | |
| Phobius | 849 | 859 | 11 | – | – | |
| Phobius | 860 | 878 | 19 | – | – | |
| TMHMM | 861 | 880 | 20 | – | – | |
| Phobius | 879 | 897 | 19 | – | – | |
| TMHMM | 895 | 914 | 20 | – | – | |
| Phobius | 898 | 926 | 29 | – | – | |
| Phobius | 927 | 946 | 20 | – | – | |
| TMHMM | 944 | 966 | 23 | – | – | |
| Phobius | 947 | 970 | 24 | – | – | |
| Phobius | 971 | 975 | 5 | – | – | |
| Phobius | 976 | 995 | 20 | – | – | |
| TMHMM | 976 | 998 | 23 | – | – | |
| Phobius | 996 | 1014 | 19 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Molecular function | Cellulose synthase (UDP-forming) activity | Catalysis of the reaction: UDP-glucose + ((1,4)-beta-D-glucosyl)(n) = UDP + ((1,4)-beta-D-glucosyl)(n+1). | ||
| Biological process | Cellulose biosynthetic process | The chemical reactions and pathways resulting in the formation of cellulose, a linear beta1-4 glucan of molecular mass 50-400 kDa with the pyranose units in the -4C1 conformation. |
Expression pattern of Lj3g3v0807680.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0807680.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.