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Lj3g3v0839410.1

Overview

Field Value
Gene ID Lj3g3v0839410
Transcript ID Lj3g3v0839410.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: telomerase reverse transcriptase-like [Glycine max] gi|356555309|ref|XP_003545976.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
CYTOPLASMIC_DOMAIN
1 232 232 – –
PANTHER
PTHR12066:SF0
39 199 161 2.20E-208
IPR003545
PANTHER
PTHR12066
39 199 161 2.20E-208 –
SMART
SM00975
126 283 158 1.20E-31
IPR021891
Pfam
PF12009
127 280 154 4.40E-37
IPR021891
PANTHER
PTHR12066:SF0
218 854 637 2.20E-208
IPR003545
PANTHER
PTHR12066
218 854 637 2.20E-208 –
Phobius
TRANSMEMBRANE
233 252 20 – –
PRINTS
PR01365
250 264 15 1.10E-06
IPR003545
Phobius
NON_CYTOPLASMIC_DOMAIN
253 854 602 – –
ProSiteProfiles
PS50878
292 660 369 26.382
IPR000477
SUPERFAMILY
SSF56672
421 442 22 7.41E-06 –
SUPERFAMILY
SSF56672
506 624 119 7.41E-06 –
CDD
cd01648
522 661 140 1.28E-26 –
PRINTS
PR01365
523 539 17 1.10E-06
IPR003545

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0003721
Molecular function Telomerase RNA reverse transcriptase activity Catalysis of the extension of the 3' end of a DNA strand by one deoxynucleotide at a time. Cannot initiate a chain de novo; uses the RNA subunit of the telomerase enzyme complex as its template.
Subterm of
Part of
GO:0003964
Molecular function RNA-directed DNA polymerase activity Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes RNA-template-directed extension of the 3'- end of a DNA strand by one deoxynucleotide at a time.
Subterm of

Genome browser

LORE1 insertions 55

Expression data

Expression pattern

Expression pattern of Lj3g3v0839410.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0839410.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.