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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0839410 |
| Transcript ID | Lj3g3v0839410.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | telomerase reverse transcriptase [Populus trichocarpa] gi|198075764|gb|ACH81294.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 629 | 629 | – | – | |
| PANTHER | 1 | 596 | 596 | 6.80E-260 | – | |
| PANTHER | 1 | 596 | 596 | 6.80E-260 | ||
| SMART | 523 | 680 | 158 | 1.20E-31 | ||
| Pfam | 524 | 677 | 154 | 7.80E-37 | ||
| PANTHER | 615 | 1251 | 637 | 6.80E-260 | ||
| PANTHER | 615 | 1251 | 637 | 6.80E-260 | – | |
| Phobius | 630 | 649 | 20 | – | – | |
| PRINTS | 647 | 661 | 15 | 2.30E-06 | ||
| Phobius | 650 | 1251 | 602 | – | – | |
| ProSiteProfiles | 689 | 1057 | 369 | 26.382 | ||
| SUPERFAMILY | 818 | 839 | 22 | 1.41E-05 | – | |
| SUPERFAMILY | 903 | 1021 | 119 | 1.41E-05 | – | |
| CDD | 919 | 1058 | 140 | 5.19E-27 | – | |
| PRINTS | 920 | 936 | 17 | 2.30E-06 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | Telomerase RNA reverse transcriptase activity | Catalysis of the extension of the 3' end of a DNA strand by one deoxynucleotide at a time. Cannot initiate a chain de novo; uses the RNA subunit of the telomerase enzyme complex as its template. | ||
| Molecular function | RNA-directed DNA polymerase activity | Catalysis of the reaction: deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1). Catalyzes RNA-template-directed extension of the 3'- end of a DNA strand by one deoxynucleotide at a time. |
Expression pattern of Lj3g3v0839410.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0839410.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.