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Lj3g3v0881630.1

Overview

Field Value
Gene ID Lj3g3v0881630
Transcript ID Lj3g3v0881630.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: chaperone protein dnaJ 1, mitochondrial-like [Glycine max] gi|356542391|ref|XP_003539650.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-TM_GRAM_POSITIVE
1 24 24 – –
PANTHER
PTHR24078:SF289
29 348 320 3.00E-170 –
PANTHER
PTHR24078
29 348 320 3.00E-170 –
Gene3D
G3DSA:1.10.287.110
89 183 95 3.80E-29
IPR001623
SUPERFAMILY
SSF46565
90 183 94 7.72E-29
IPR001623
SMART
SM00271
90 148 59 7.40E-27
IPR001623
ProSiteProfiles
PS50076
91 156 66 21.94
IPR001623
CDD
cd06257
91 145 55 6.32E-25
IPR001623
Pfam
PF00226
91 153 63 6.00E-25
IPR001623
PRINTS
PR00625
93 111 19 7.50E-24
IPR001623
PRINTS
PR00625
111 126 16 7.50E-24
IPR001623
PRINTS
PR00625
128 148 21 7.50E-24
IPR001623
ProSitePatterns
PS00636
133 152 20 –
IPR018253
PRINTS
PR00625
148 167 20 7.50E-24
IPR001623
SUPERFAMILY
SSF49493
186 213 28 2.09E-09
IPR008971
Gene3D
G3DSA:2.60.260.20
187 206 20 1.50E-10 –
CDD
cd10747
188 348 161 2.72E-23 –
Pfam
PF01556
191 348 158 3.80E-17
IPR002939
ProSiteProfiles
PS51188
204 282 79 23.285
IPR001305
SUPERFAMILY
SSF57938
204 279 76 7.59E-19
IPR001305
Gene3D
G3DSA:2.10.230.10
207 268 62 1.10E-19
IPR001305
Pfam
PF00684
217 277 61 1.20E-11
IPR001305
CDD
cd10719
217 277 61 3.24E-21 –
Gene3D
G3DSA:2.60.260.20
269 324 56 1.50E-10 –
SUPERFAMILY
SSF49493
282 325 44 2.09E-09
IPR008971

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006457
Biological process Protein folding The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
Subterm of
GO:0031072
Molecular function Heat shock protein binding Interacting selectively and non-covalently with a heat shock protein, any protein synthesized or activated in response to heat shock.
Subterm of
GO:0051082
Molecular function Unfolded protein binding Interacting selectively and non-covalently with an unfolded protein.
Subterm of

Genome browser

LORE1 insertions 12

Expression data

Expression pattern

Expression pattern of Lj3g3v0881630.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v0881630.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.