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| Field | Value |
|---|---|
| Gene ID | Lj3g3v0965970 |
| Transcript ID | Lj3g3v0965970.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g20230-like [Glycine max] gi|356555170|ref|XP_003545909.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 3 | 449 | 447 | 0 | – | |
| PANTHER | 3 | 449 | 447 | 0 | – | |
| ProSiteProfiles | 4 | 34 | 31 | 7.969 | ||
| Pfam | 9 | 35 | 27 | 0.0039 | ||
| TIGRFAM | 9 | 37 | 29 | 4.90E-04 | ||
| ProSiteProfiles | 35 | 69 | 35 | 10.72 | ||
| Pfam | 37 | 67 | 31 | 5.10E-04 | ||
| ProSiteProfiles | 70 | 104 | 35 | 5.952 | ||
| ProSiteProfiles | 105 | 135 | 31 | 7.662 | ||
| Pfam | 108 | 134 | 27 | 0.15 | ||
| Gene3D | 134 | 228 | 95 | 8.10E-10 | ||
| ProSiteProfiles | 136 | 170 | 35 | 10.479 | ||
| Pfam | 138 | 168 | 31 | 6.90E-04 | ||
| TIGRFAM | 138 | 171 | 34 | 1.00E-05 | ||
| ProSiteProfiles | 171 | 205 | 35 | 12.934 | ||
| Pfam | 172 | 217 | 46 | 1.00E-10 | ||
| TIGRFAM | 174 | 207 | 34 | 3.60E-09 | ||
| SUPERFAMILY | 234 | 305 | 72 | 2.58E-05 | ||
| ProSiteProfiles | 240 | 270 | 31 | 6.84 | ||
| Pfam | 270 | 318 | 49 | 1.60E-12 | ||
| ProSiteProfiles | 271 | 305 | 35 | 11.455 | ||
| TIGRFAM | 273 | 307 | 35 | 3.80E-05 | ||
| Gene3D | 274 | 301 | 28 | 8.10E-10 | ||
| ProSiteProfiles | 306 | 340 | 35 | 8.824 | ||
| TIGRFAM | 308 | 342 | 35 | 4.40E-04 | ||
| Pfam | 339 | 369 | 31 | 1.30E-05 | ||
| Gene3D | 340 | 429 | 90 | 8.10E-10 | ||
| SUPERFAMILY | 341 | 429 | 89 | 2.58E-05 | ||
| ProSiteProfiles | 342 | 372 | 31 | 8.955 | ||
| TIGRFAM | 346 | 369 | 24 | 8.20E-04 | ||
| ProSiteProfiles | 408 | 442 | 35 | 7.267 | ||
| Pfam | 444 | 568 | 125 | 5.50E-40 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj3g3v0965970.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v0965970.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.