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| Field | Value |
|---|---|
| Gene ID | Lj3g3v1064910 |
| Transcript ID | Lj3g3v1064910.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Glycine max] gi|356555301|ref|XP_003545972.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 211 | 211 | 0 | – | |
| PANTHER | 1 | 211 | 211 | 0 | – | |
| ProSiteProfiles | 9 | 43 | 35 | 5.897 | ||
| ProSiteProfiles | 44 | 74 | 31 | 6.314 | ||
| Pfam | 74 | 122 | 49 | 4.00E-12 | ||
| ProSiteProfiles | 75 | 109 | 35 | 11.345 | ||
| TIGRFAM | 77 | 111 | 35 | 5.90E-07 | ||
| ProSiteProfiles | 145 | 175 | 31 | 8.013 | ||
| Pfam | 148 | 172 | 25 | 0.017 | ||
| Gene3D | 150 | 194 | 45 | 8.50E-08 | ||
| Pfam | 175 | 223 | 49 | 1.30E-10 | ||
| ProSiteProfiles | 176 | 210 | 35 | 10.337 | ||
| TIGRFAM | 178 | 212 | 35 | 6.50E-05 | ||
| ProSiteProfiles | 211 | 245 | 35 | 5.207 | ||
| ProSiteProfiles | 246 | 276 | 31 | 7.048 | ||
| Pfam | 276 | 324 | 49 | 4.30E-09 | ||
| ProSiteProfiles | 277 | 311 | 35 | 10.808 | ||
| Gene3D | 280 | 311 | 32 | 8.50E-08 | ||
| TIGRFAM | 280 | 309 | 30 | 2.30E-05 | ||
| ProSiteProfiles | 347 | 377 | 31 | 7.026 | ||
| Gene3D | 348 | 474 | 127 | 8.50E-08 | ||
| PANTHER | 348 | 657 | 310 | 0 | – | |
| PANTHER | 348 | 657 | 310 | 0 | – | |
| Pfam | 352 | 373 | 22 | 0.4 | ||
| SUPERFAMILY | 364 | 402 | 39 | 7.86E-06 | ||
| ProSiteProfiles | 378 | 412 | 35 | 10.665 | ||
| Pfam | 378 | 425 | 48 | 1.20E-08 | ||
| TIGRFAM | 380 | 413 | 34 | 3.70E-06 | ||
| ProSiteProfiles | 413 | 447 | 35 | 7.267 | ||
| ProSiteProfiles | 448 | 478 | 31 | 8.55 | ||
| TIGRFAM | 453 | 481 | 29 | 0.0019 | ||
| Pfam | 479 | 525 | 47 | 1.10E-10 | ||
| ProSiteProfiles | 479 | 513 | 35 | 12.112 | ||
| TIGRFAM | 481 | 514 | 34 | 3.00E-08 | ||
| Gene3D | 490 | 638 | 149 | 3.20E-04 | ||
| ProSiteProfiles | 514 | 544 | 31 | 6.401 | ||
| Pfam | 546 | 577 | 32 | 9.50E-06 | ||
| ProSiteProfiles | 550 | 580 | 31 | 7.651 | ||
| TIGRFAM | 554 | 577 | 24 | 0.0024 | ||
| SUPERFAMILY | 589 | 638 | 50 | 7.86E-06 | ||
| ProSiteProfiles | 616 | 650 | 35 | 5.853 | ||
| Pfam | 652 | 776 | 125 | 8.70E-41 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj3g3v1064910.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v1064910.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.