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| Field | Value |
|---|---|
| Gene ID | Lj3g3v1089390 |
| Transcript ID | Lj3g3v1089390.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Cyclic nucleotide-gated channel 15 [Theobroma cacao] gi|508787143|gb|EOY34399.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 298 | 298 | 0 | – | |
| PANTHER | 1 | 298 | 298 | 0 | – | |
| Phobius | 1 | 111 | 111 | – | – | |
| SUPERFAMILY | 100 | 298 | 199 | 5.10E-29 | – | |
| Gene3D | 109 | 297 | 189 | 4.10E-19 | – | |
| Pfam | 109 | 428 | 320 | 2.20E-27 | ||
| Phobius | 112 | 130 | 19 | – | – | |
| Phobius | 131 | 200 | 70 | – | – | |
| PRINTS | 164 | 173 | 10 | 1.10E-05 | ||
| TMHMM | 200 | 222 | 23 | – | – | |
| Phobius | 201 | 222 | 22 | – | – | |
| Phobius | 223 | 233 | 11 | – | – | |
| Phobius | 234 | 251 | 18 | – | – | |
| TMHMM | 234 | 256 | 23 | – | – | |
| Phobius | 252 | 270 | 19 | – | – | |
| TMHMM | 271 | 293 | 23 | – | – | |
| Phobius | 271 | 293 | 23 | – | – | |
| PRINTS | 281 | 291 | 11 | 1.10E-05 | ||
| Phobius | 294 | 387 | 94 | – | – | |
| PANTHER | 344 | 721 | 378 | 0 | – | |
| PANTHER | 344 | 721 | 378 | 0 | – | |
| Gene3D | 363 | 422 | 60 | 4.10E-19 | – | |
| SUPERFAMILY | 363 | 423 | 61 | 5.10E-29 | – | |
| PRINTS | 370 | 387 | 18 | 1.10E-05 | ||
| Phobius | 388 | 415 | 28 | – | – | |
| TMHMM | 393 | 415 | 23 | – | – | |
| PRINTS | 414 | 423 | 10 | 1.10E-05 | ||
| Phobius | 416 | 721 | 306 | – | – | |
| Gene3D | 423 | 492 | 70 | 1.90E-13 | – | |
| SUPERFAMILY | 431 | 627 | 197 | 1.24E-33 | ||
| PRINTS | 464 | 471 | 8 | 1.10E-05 | ||
| Gene3D | 499 | 617 | 119 | 3.70E-25 | ||
| SMART | 501 | 632 | 132 | 5.30E-11 | ||
| ProSiteProfiles | 501 | 598 | 98 | 12.349 | ||
| CDD | 501 | 632 | 132 | 4.51E-15 | – | |
| ProSiteProfiles | 637 | 665 | 29 | 6.668 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Ion channel activity | Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size). | ||
| Molecular function | Voltage-gated potassium channel activity | Enables the transmembrane transfer of a potassium ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Ion transport | The directed movement of charged atoms or small charged molecules into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Biological process | Potassium ion transport | The directed movement of potassium ions (K+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj3g3v1089390.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v1089390.3, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.