Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj3g3v1112970.1

Overview

Field Value
Gene ID Lj3g3v1112970
Transcript ID Lj3g3v1112970.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ABC transporter F family member 1-like [Glycine max] gi|356539344|ref|XP_003538158.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR19211:SF52
1 577 577 0 –
PANTHER
PTHR19211
1 577 577 0 –
MobiDBLite
mobidb-lite
1 23 23 – –
SUPERFAMILY
SSF52540
64 148 85 3.15E-39
IPR027417
CDD
cd03221
71 288 218 9.06E-43 –
ProSiteProfiles
PS50893
71 311 241 14.906
IPR003439
Gene3D
G3DSA:3.40.50.300
71 329 259 7.90E-42
IPR027417
Pfam
PF00005
89 243 155 1.30E-22
IPR003439
SMART
SM00382
95 297 203 6.60E-07
IPR003593
SUPERFAMILY
SSF52540
184 320 137 3.15E-39
IPR027417
ProSitePatterns
PS00211
215 229 15 –
IPR017871
Pfam
PF12848
282 354 73 2.00E-22
IPR032781
Coils
Coil
289 309 21 – –
SUPERFAMILY
SSF52540
367 574 208 6.87E-42
IPR027417
Gene3D
G3DSA:3.40.50.300
380 575 196 3.10E-40
IPR027417
ProSiteProfiles
PS50893
382 577 196 12.965
IPR003439
CDD
cd03221
382 573 192 1.39E-51 –
Pfam
PF00005
398 529 132 9.90E-23
IPR003439
SMART
SM00382
407 574 168 1.70E-07
IPR003593

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0016887
Molecular function ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
Subterm of

Genome browser

LORE1 insertions 6

Expression data

Expression pattern

Expression pattern of Lj3g3v1112970.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1112970.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.