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Lj3g3v1113600.1

Overview

Field Value
Gene ID Lj3g3v1113600
Transcript ID Lj3g3v1113600.1
Lotus japonicus genome version MG20 v3.0
Description Histone H2B [Medicago truncatula] gi|357472693|ref|XP_003606631.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
1 50 50 – –
Pfam
PF00125
6 119 114 3.80E-22
IPR007125
PANTHER
PTHR23428
12 143 132 2.90E-125
IPR000558
Gene3D
G3DSA:1.10.20.10
23 143 121 1.50E-57
IPR009072
SUPERFAMILY
SSF47113
27 143 117 1.61E-52
IPR009072
SMART
SM00427
46 142 97 1.20E-73
IPR000558
PRINTS
PR00621
56 74 19 3.10E-49
IPR000558
PRINTS
PR00621
75 95 21 3.10E-49
IPR000558
PRINTS
PR00621
97 114 18 3.10E-49
IPR000558
ProSitePatterns
PS00357
111 133 23 –
IPR000558
PRINTS
PR00621
114 127 14 3.10E-49
IPR000558
PRINTS
PR00621
127 140 14 3.10E-49
IPR000558

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0046982
Molecular function Protein heterodimerization activity Interacting selectively and non-covalently with a nonidentical protein to form a heterodimer.
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj3g3v1113600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v1113600.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.