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SM00427

Source: SMART

Description

No description is available for this domain.

Associated GO terms

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000786
Cellular component Nucleosome A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures.
Subterm of
Part of
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of

Associated Lotus transcripts 16

Transcript Name Description Predicted domains Domain count
Lj3g3v1113600.1
– Histone H2B [Medicago truncatula] gi|357472693|ref|XP_003606631.1|
Domains
11
Lj3g3v1113650.1
– Histone H2 [Populus trichocarpa] gi|224113151|ref|XP_002316408.1|
Domains
10
Lj3g3v1114700.1
– Histone H2B [Medicago truncatula] gi|357472693|ref|XP_003606631.1|
Domains
11
Lj3g3v3120830.1
– Histone H2B [Medicago truncatula] gi|357472693|ref|XP_003606631.1|
Domains
11
LotjaGi1g1v0698500.1
– Histone H2B; TAIR: AT2G37470.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|I3SY24|I3SY24_LOTJA Histone H2B; Found in the gene: LotjaGi1g1v0698500
Domains
12
LotjaGi2g1v0366200.1
– Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|G7JTQ7|G7JTQ7_MEDTR Histone H2B; Found in the gene: LotjaGi2g1v0366200
Domains
11
LotjaGi2g1v0370400.1
– Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|M5WKF6|M5WKF6_PRUPE Histone H2B; Found in the gene: LotjaGi2g1v0370400
Domains
12
LotjaGi2g1v0370600.1
– Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|O22582|H2B_GOSHI Histone H2B; TrEMBL-Plants: tr|M1BEW2|M1BEW2_SOLTU Histone H2B; Found in the gene: LotjaGi2g1v0370600
Domains
12
LotjaGi2g1v0370600.2
– Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|M5WKF6|M5WKF6_PRUPE Histone H2B; Found in the gene: LotjaGi2g1v0370600
Domains
12
LotjaGi3g1v0169600.1
– Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|P93354|H2B_TOBAC Histone H2B; TrEMBL-Plants: tr|I3S6P0|I3S6P0_LOTJA Histone H2B; Found in the gene: LotjaGi3g1v0169600
Domains
12
LotjaGi3g1v0169600.2
– Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|P93354|H2B_TOBAC Histone H2B; TrEMBL-Plants: tr|I3S6P0|I3S6P0_LOTJA Histone H2B; Found in the gene: LotjaGi3g1v0169600
Domains
12
LotjaGi3g1v0169600.3
– Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|P93354|H2B_TOBAC Histone H2B; TrEMBL-Plants: tr|I3S6P0|I3S6P0_LOTJA Histone H2B; Found in the gene: LotjaGi3g1v0169600
Domains
12
LotjaGi3g1v0169700.1
– Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|G7JTQ9|G7JTQ9_MEDTR Histone H2B; Found in the gene: LotjaGi3g1v0169700
Domains
12
LotjaGi3g1v0483400.1
– Histone H2B; TAIR: AT2G28720.1 Histone superfamily protein; Swiss-Prot: sp|Q5BJA5|H2B1_DANRE Histone H2B 1/2; TrEMBL-Plants: tr|I1LKY2|I1LKY2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0483400
Domains
12
LotjaGi5g1v0069100.1
– Histone H2B; TAIR: AT2G37470.1 Histone superfamily protein; Swiss-Prot: sp|Q9ZUS0|H2B4_ARATH Histone H2B.4; TrEMBL-Plants: tr|I3T995|I3T995_LOTJA Histone H2B; Found in the gene: LotjaGi5g1v0069100
Domains
12
LotjaGi5g1v0253600.1
– Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|O65819|H2B3_SOLLC Histone H2B.3; TrEMBL-Plants: tr|I3SW26|I3SW26_LOTJA Histone H2B; Found in the gene: LotjaGi5g1v0253600
Domains
12

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 6.25