Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
IPR000558 is a Histone H2B.
<p>Histone H2B is one of the five histones, along with H1/H5, H2A, H3 and H4. Two copies of each of the H2A, H2B, H3, and H4 histones ensemble to form the core of the nucleosome [[cite:PUB00066796]]. The nucleosome forms octameric structure that wraps DNA in a left-handed manner. Histones can undergo several different types of post-translational modifications that affect transcription, DNA repair, DNA replication and chromosomal stability.</p>
This description is obtained from EB-eye REST.
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleosome | A complex comprised of DNA wound around a multisubunit core and associated proteins, which forms the primary packing unit of DNA into higher order structures. | ||
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). |
| Transcript | Name | Description | Predicted domains | Domain count |
|---|---|---|---|---|
| – | Histone H2B [Medicago truncatula] gi|357472693|ref|XP_003606631.1| | 11 | ||
| – | Histone H2 [Populus trichocarpa] gi|224113151|ref|XP_002316408.1| | 10 | ||
| – | Histone H2B [Medicago truncatula] gi|357472693|ref|XP_003606631.1| | 11 | ||
| – | PREDICTED: histone H2B.2-like [Cicer arietinum] gi|502084676|ref|XP_004487735.1| | 7 | ||
| – | Histone H2B [Medicago truncatula] gi|357472693|ref|XP_003606631.1| | 11 | ||
| – | Histone H2B; TAIR: AT2G37470.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|I3SY24|I3SY24_LOTJA Histone H2B; Found in the gene: LotjaGi1g1v0698500 | 12 | ||
| – | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|G7JTQ7|G7JTQ7_MEDTR Histone H2B; Found in the gene: LotjaGi2g1v0366200 | 11 | ||
| – | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|M5WKF6|M5WKF6_PRUPE Histone H2B; Found in the gene: LotjaGi2g1v0370400 | 12 | ||
| – | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|O22582|H2B_GOSHI Histone H2B; TrEMBL-Plants: tr|M1BEW2|M1BEW2_SOLTU Histone H2B; Found in the gene: LotjaGi2g1v0370600 | 12 | ||
| – | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|M5WKF6|M5WKF6_PRUPE Histone H2B; Found in the gene: LotjaGi2g1v0370600 | 12 | ||
| – | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|P93354|H2B_TOBAC Histone H2B; TrEMBL-Plants: tr|I3S6P0|I3S6P0_LOTJA Histone H2B; Found in the gene: LotjaGi3g1v0169600 | 12 | ||
| – | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|P93354|H2B_TOBAC Histone H2B; TrEMBL-Plants: tr|I3S6P0|I3S6P0_LOTJA Histone H2B; Found in the gene: LotjaGi3g1v0169600 | 12 | ||
| – | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|P93354|H2B_TOBAC Histone H2B; TrEMBL-Plants: tr|I3S6P0|I3S6P0_LOTJA Histone H2B; Found in the gene: LotjaGi3g1v0169600 | 12 | ||
| – | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|Q1S9I9|H2B1_MEDTR Probable histone H2B.1; TrEMBL-Plants: tr|G7JTQ9|G7JTQ9_MEDTR Histone H2B; Found in the gene: LotjaGi3g1v0169700 | 12 | ||
| – | Histone H2B; TAIR: AT2G28720.1 Histone superfamily protein; Swiss-Prot: sp|Q5BJA5|H2B1_DANRE Histone H2B 1/2; TrEMBL-Plants: tr|I1LKY2|I1LKY2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0483400 | 12 | ||
| – | Histone H2B; TAIR: AT2G37470.1 Histone superfamily protein; Swiss-Prot: sp|Q9ZUS0|H2B4_ARATH Histone H2B.4; TrEMBL-Plants: tr|I3T995|I3T995_LOTJA Histone H2B; Found in the gene: LotjaGi5g1v0069100 | 12 | ||
| – | Histone H2B; TAIR: AT3G45980.1 Histone superfamily protein; Swiss-Prot: sp|O65819|H2B3_SOLLC Histone H2B.3; TrEMBL-Plants: tr|I3SW26|I3SW26_LOTJA Histone H2B; Found in the gene: LotjaGi5g1v0253600 | 12 |
A list of co-occurring predicted domains within the L. japonicus gene space:
| Predicted domain | Source | Observations | Saturation (%) |
|---|---|---|---|
| mobidb-lite | MobiDBLite | 1 | 5.88 |