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| Field | Value |
|---|---|
| Gene ID | Lj3g3v1338000 |
| Transcript ID | Lj3g3v1338000.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: homeobox-leucine zipper protein HDG2-like [Glycine max] gi|356550018|ref|XP_003543387.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 37 | 37 | – | – | |
| Phobius | 1 | 21 | 21 | – | – | |
| Phobius | 22 | 32 | 11 | – | – | |
| Phobius | 33 | 37 | 5 | – | – | |
| Phobius | 38 | 773 | 736 | – | – | |
| PANTHER | 50 | 178 | 129 | 0 | – | |
| PANTHER | 50 | 178 | 129 | 0 | – | |
| MobiDBLite | 73 | 111 | 39 | – | – | |
| Gene3D | 81 | 157 | 77 | 4.20E-23 | ||
| SUPERFAMILY | 91 | 159 | 69 | 2.26E-19 | ||
| ProSiteProfiles | 99 | 159 | 61 | 16.892 | ||
| SMART | 100 | 163 | 64 | 1.00E-18 | ||
| CDD | 102 | 160 | 59 | 5.55E-19 | – | |
| Pfam | 102 | 157 | 56 | 5.30E-18 | ||
| ProSitePatterns | 134 | 157 | 24 | – | ||
| Coils | 158 | 185 | 28 | – | – | |
| PANTHER | 207 | 220 | 14 | 0 | – | |
| PANTHER | 207 | 220 | 14 | 0 | – | |
| SUPERFAMILY | 283 | 514 | 232 | 1.43E-34 | – | |
| ProSiteProfiles | 283 | 515 | 233 | 44.672 | ||
| CDD | 287 | 511 | 225 | 2.34E-129 | – | |
| SMART | 292 | 512 | 221 | 5.20E-60 | ||
| Pfam | 293 | 512 | 220 | 6.00E-57 | ||
| Gene3D | 381 | 493 | 113 | 8.70E-06 | ||
| PANTHER | 488 | 769 | 282 | 0 | – | |
| PANTHER | 488 | 769 | 282 | 0 | – | |
| SUPERFAMILY | 532 | 765 | 234 | 1.43E-21 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Molecular function | Lipid binding | Interacting selectively and non-covalently with a lipid. | ||
| Molecular function | Sequence-specific DNA binding | Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding. |
Expression pattern of Lj3g3v1338000.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v1338000.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.