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| Field | Value |
|---|---|
| Gene ID | Lj3g3v1906470 |
| Transcript ID | Lj3g3v1906470.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Glycine max] gi|356548837|ref|XP_003542805.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 927 | 927 | 0 | – | |
| PANTHER | 1 | 927 | 927 | 0 | ||
| SUPERFAMILY | 8 | 990 | 983 | 2.99E-258 | – | |
| Pfam | 22 | 194 | 173 | 8.40E-14 | ||
| Gene3D | 58 | 184 | 127 | 7.30E-04 | ||
| CDD | 133 | 987 | 855 | 0 | ||
| Gene3D | 185 | 352 | 168 | 2.70E-43 | – | |
| Pfam | 278 | 341 | 64 | 7.40E-26 | ||
| Pfam | 395 | 452 | 58 | 4.10E-19 | ||
| Gene3D | 505 | 580 | 76 | 2.70E-43 | – | |
| Pfam | 510 | 877 | 368 | 4.60E-111 | ||
| Gene3D | 581 | 595 | 15 | 1.20E-56 | ||
| Gene3D | 596 | 677 | 82 | 1.90E-07 | ||
| MobiDBLite | 621 | 652 | 32 | – | – | |
| Gene3D | 706 | 855 | 150 | 1.20E-56 | ||
| ProSitePatterns | 716 | 728 | 13 | – | ||
| Pfam | 879 | 987 | 109 | 5.20E-22 | ||
| PANTHER | 945 | 993 | 49 | 0 | – | |
| PANTHER | 945 | 993 | 49 | 0 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | DNA binding | Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid). | ||
| Molecular function | DNA-directed 5'-3' RNA polymerase activity | Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Transcription, DNA-templated | The cellular synthesis of RNA on a template of DNA. | ||
| Molecular function | Ribonucleoside binding | Interacting selectively and non-covalently with a ribonucleoside, a compound consisting of a purine or pyrimidine nitrogenous base linked to ribose. |
Expression pattern of Lj3g3v1906470.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v1906470.1, powered by CORGI.
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