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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2340910 |
| Transcript ID | Lj3g3v2340910.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: signal peptide peptidase-like 4-like isoform X1 [Cicer arietinum] gi|502157171|ref|XP_004510782.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | – | – | |
| SignalP | 1 | 24 | 24 | – | – | |
| Phobius | 1 | 3 | 3 | – | – | |
| Phobius | 4 | 19 | 16 | – | – | |
| TMHMM | 7 | 29 | 23 | – | – | |
| PANTHER | 14 | 511 | 498 | 0 | – | |
| PANTHER | 14 | 511 | 498 | 0 | ||
| Phobius | 20 | 24 | 5 | – | – | |
| Phobius | 25 | 193 | 169 | – | – | |
| Gene3D | 85 | 180 | 96 | 1.10E-15 | – | |
| Pfam | 90 | 167 | 78 | 2.30E-08 | ||
| SUPERFAMILY | 98 | 177 | 80 | 6.15E-06 | – | |
| TMHMM | 191 | 213 | 23 | – | – | |
| Phobius | 194 | 215 | 22 | – | – | |
| Phobius | 216 | 245 | 30 | – | – | |
| Coils | 219 | 239 | 21 | – | – | |
| SMART | 245 | 511 | 267 | 2.60E-85 | ||
| TMHMM | 246 | 268 | 23 | – | – | |
| Pfam | 246 | 510 | 265 | 1.60E-76 | ||
| Phobius | 246 | 269 | 24 | – | – | |
| Phobius | 270 | 280 | 11 | – | – | |
| TMHMM | 278 | 300 | 23 | – | – | |
| Phobius | 281 | 306 | 26 | – | – | |
| Phobius | 307 | 317 | 11 | – | – | |
| Phobius | 318 | 343 | 26 | – | – | |
| TMHMM | 320 | 342 | 23 | – | – | |
| Phobius | 344 | 348 | 5 | – | – | |
| TMHMM | 346 | 368 | 23 | – | – | |
| Phobius | 349 | 368 | 20 | – | – | |
| Phobius | 369 | 374 | 6 | – | – | |
| TMHMM | 375 | 394 | 20 | – | – | |
| Phobius | 375 | 393 | 19 | – | – | |
| Phobius | 394 | 429 | 36 | – | – | |
| Phobius | 430 | 452 | 23 | – | – | |
| TMHMM | 430 | 452 | 23 | – | – | |
| Phobius | 453 | 463 | 11 | – | – | |
| Phobius | 464 | 485 | 22 | – | – | |
| TMHMM | 465 | 487 | 23 | – | – | |
| Phobius | 486 | 490 | 5 | – | – | |
| Phobius | 491 | 510 | 20 | – | – | |
| Phobius | 511 | 511 | 1 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Aspartic-type endopeptidase activity | Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a mechanism in which a water molecule bound by the side chains of aspartic residues at the active center acts as a nucleophile. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. |
Expression pattern of Lj3g3v2340910.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2340910.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.