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Lj3g3v2575830.1

Overview

Field Value
Gene ID Lj3g3v2575830
Transcript ID Lj3g3v2575830.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-like [Glycine max] gi|356522438|ref|XP_003529853.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11685:SF149
69 237 169 3.20E-73 –
PANTHER
PTHR11685
69 237 169 3.20E-73
IPR031127
SUPERFAMILY
SSF57850
95 175 81 6.75E-19 –
Gene3D
G3DSA:3.30.40.10
95 161 67 2.30E-06
IPR013083
ProSiteProfiles
PS50089
98 143 46 9.671
IPR001841
ProSitePatterns
PS00518
116 125 10 –
IPR017907
SMART
SM00647
166 229 64 2.70E-17
IPR002867
Pfam
PF01485
167 229 63 4.80E-12
IPR002867
SUPERFAMILY
SSF57850
174 231 58 4.94E-07 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj3g3v2575830.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v2575830.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.