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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2809790 |
| Transcript ID | Lj3g3v2809790.3 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: transmembrane E3 ubiquitin-protein ligase 1-like isoform X2 [Cicer arietinum] gi|502082777|ref|XP_004487270.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 26 | 26 | – | – | |
| Phobius | 1 | 8 | 8 | – | – | |
| SignalP | 1 | 26 | 26 | – | – | |
| Phobius | 9 | 21 | 13 | – | – | |
| PANTHER | 9 | 552 | 544 | 0 | – | |
| PANTHER | 9 | 552 | 544 | 0 | – | |
| TMHMM | 10 | 27 | 18 | – | – | |
| Phobius | 22 | 26 | 5 | – | – | |
| Phobius | 27 | 256 | 230 | – | – | |
| TMHMM | 257 | 276 | 20 | – | – | |
| Phobius | 257 | 276 | 20 | – | – | |
| Phobius | 277 | 287 | 11 | – | – | |
| Phobius | 288 | 311 | 24 | – | – | |
| Phobius | 312 | 322 | 11 | – | – | |
| Phobius | 323 | 345 | 23 | – | – | |
| TMHMM | 323 | 345 | 23 | – | – | |
| Phobius | 346 | 365 | 20 | – | – | |
| TMHMM | 366 | 388 | 23 | – | – | |
| Phobius | 366 | 385 | 20 | – | – | |
| Phobius | 386 | 390 | 5 | – | – | |
| Phobius | 391 | 410 | 20 | – | – | |
| Phobius | 411 | 421 | 11 | – | – | |
| TMHMM | 418 | 440 | 23 | – | – | |
| Phobius | 422 | 439 | 18 | – | – | |
| Phobius | 440 | 450 | 11 | – | – | |
| Phobius | 451 | 470 | 20 | – | – | |
| TMHMM | 453 | 475 | 23 | – | – | |
| Phobius | 471 | 552 | 82 | – | – | |
| SUPERFAMILY | 485 | 551 | 67 | 2.14E-12 | – | |
| Gene3D | 496 | 551 | 56 | 1.30E-12 | ||
| CDD | 504 | 552 | 49 | 7.44E-09 | – | |
| Pfam | 504 | 549 | 46 | 9.90E-09 | ||
| SMART | 504 | 549 | 46 | 0.0064 | ||
| SMART | 505 | 548 | 44 | 3.60E-06 | ||
| ProSiteProfiles | 505 | 549 | 45 | 11.811 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. |
Expression pattern of Lj3g3v2809790.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2809790.3, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.