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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2986090 |
| Transcript ID | Lj3g3v2986090.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Fatty acid/sphingolipid desaturase [Theobroma cacao] gi|508703935|gb|EOX95831.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 1 | 436 | 436 | 6.50E-131 | ||
| PANTHER | 1 | 448 | 448 | 0 | – | |
| Phobius | 1 | 110 | 110 | – | – | |
| PANTHER | 1 | 448 | 448 | 0 | – | |
| SUPERFAMILY | 4 | 81 | 78 | 1.44E-26 | ||
| ProSiteProfiles | 5 | 89 | 85 | 23.691 | ||
| Gene3D | 5 | 78 | 74 | 1.30E-25 | ||
| SMART | 8 | 89 | 82 | 2.00E-23 | ||
| Pfam | 9 | 78 | 70 | 2.90E-23 | ||
| TMHMM | 109 | 131 | 23 | – | – | |
| Phobius | 111 | 130 | 20 | – | – | |
| Phobius | 131 | 135 | 5 | – | – | |
| Phobius | 136 | 156 | 21 | – | – | |
| Pfam | 136 | 407 | 272 | 1.30E-33 | ||
| TMHMM | 136 | 158 | 23 | – | – | |
| CDD | 140 | 403 | 264 | 3.00E-60 | – | |
| Phobius | 157 | 176 | 20 | – | – | |
| Phobius | 177 | 193 | 17 | – | – | |
| Phobius | 194 | 212 | 19 | – | – | |
| Phobius | 213 | 232 | 20 | – | – | |
| Phobius | 233 | 252 | 20 | – | – | |
| TMHMM | 251 | 273 | 23 | – | – | |
| Phobius | 253 | 274 | 22 | – | – | |
| Phobius | 275 | 285 | 11 | – | – | |
| TMHMM | 285 | 307 | 23 | – | – | |
| Phobius | 286 | 306 | 21 | – | – | |
| Phobius | 307 | 448 | 142 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | Lipid metabolic process | The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Oxidoreductase activity | Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced. |
Expression pattern of Lj3g3v2986090.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2986090.1, powered by CORGI.
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