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Lj3g3v3066900.1

Overview

Field Value
Gene ID Lj3g3v3066900
Transcript ID Lj3g3v3066900.1
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ABC transporter F family member 1-like isoform 1 [Glycine max] gi|356543500|ref|XP_003540198.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR19211:SF52
9 538 530 0 –
PANTHER
PTHR19211
9 538 530 0 –
SUPERFAMILY
SSF52540
11 99 89 1.63E-39
IPR027417
ProSiteProfiles
PS50893
14 254 241 14.853
IPR003439
CDD
cd03221
15 231 217 2.66E-43 –
Gene3D
G3DSA:3.40.50.300
15 272 258 7.20E-42
IPR027417
Pfam
PF00005
32 186 155 1.20E-21
IPR003439
SMART
SM00382
38 231 194 2.00E-06
IPR003593
SUPERFAMILY
SSF52540
127 258 132 1.63E-39
IPR027417
ProSitePatterns
PS00211
158 172 15 –
IPR017871
Pfam
PF12848
225 297 73 9.40E-23
IPR032781
SUPERFAMILY
SSF52540
308 520 213 8.56E-42
IPR027417
Gene3D
G3DSA:3.40.50.300
323 527 205 2.40E-40
IPR027417
ProSiteProfiles
PS50893
325 540 216 15.06
IPR003439
CDD
cd03221
325 517 193 4.85E-52 –
Pfam
PF00005
341 472 132 3.90E-23
IPR003439
SMART
SM00382
350 538 189 2.20E-05
IPR003593

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0016887
Molecular function ATPase activity Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
Subterm of

Genome browser

LORE1 insertions 18

Expression data

Expression pattern

Expression pattern of Lj3g3v3066900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3066900.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.