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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3188540 |
| Transcript ID | Lj3g3v3188540.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: inner membrane protein PPF-1, chloroplastic-like [Glycine max] gi|356539022|ref|XP_003537999.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 257 | 257 | – | – | |
| MobiDBLite | 1 | 20 | 20 | – | – | |
| PANTHER | 10 | 227 | 218 | 8.40E-221 | – | |
| PANTHER | 10 | 227 | 218 | 8.40E-221 | ||
| TMHMM | 113 | 135 | 23 | – | – | |
| TIGRFAM | 118 | 332 | 215 | 2.20E-55 | ||
| Pfam | 119 | 333 | 215 | 1.00E-54 | ||
| TMHMM | 180 | 202 | 23 | – | – | |
| TMHMM | 252 | 274 | 23 | – | – | |
| Phobius | 258 | 277 | 20 | – | – | |
| PANTHER | 260 | 429 | 170 | 8.40E-221 | – | |
| PANTHER | 260 | 429 | 170 | 8.40E-221 | ||
| Phobius | 278 | 296 | 19 | – | – | |
| TMHMM | 295 | 317 | 23 | – | – | |
| Phobius | 297 | 318 | 22 | – | – | |
| Phobius | 319 | 429 | 111 | – | – | |
| MobiDBLite | 352 | 429 | 78 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | Membrane insertase activity | Mediates the integration of proteins into a membrane from the inner side of the membrane. Membrane insertases are highly conserved and include the bacterial YidC family, the plant chloroplast Alb3 family, and the fungal and animal mitochondrial Oxa1/Cox18 family. |
Expression pattern of Lj3g3v3188540.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3188540.1, powered by CORGI.
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