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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3247340 |
| Transcript ID | Lj3g3v3247340.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ABC transporter C family member 3-like [Glycine max] gi|356553519|ref|XP_003545103.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 11 | 11 | – | – | |
| PANTHER | 1 | 779 | 779 | 0 | – | |
| PANTHER | 1 | 779 | 779 | 0 | – | |
| Phobius | 12 | 35 | 24 | – | – | |
| TMHMM | 13 | 35 | 23 | – | – | |
| Phobius | 36 | 60 | 25 | – | – | |
| Phobius | 61 | 85 | 25 | – | – | |
| TMHMM | 66 | 88 | 23 | – | – | |
| Phobius | 86 | 96 | 11 | – | – | |
| Phobius | 97 | 118 | 22 | – | – | |
| TMHMM | 98 | 120 | 23 | – | – | |
| Phobius | 119 | 129 | 11 | – | – | |
| TMHMM | 127 | 149 | 23 | – | – | |
| Phobius | 130 | 152 | 23 | – | – | |
| Phobius | 153 | 163 | 11 | – | – | |
| Phobius | 164 | 184 | 21 | – | – | |
| TMHMM | 164 | 184 | 21 | – | – | |
| Phobius | 185 | 298 | 114 | – | – | |
| MobiDBLite | 197 | 216 | 20 | – | – | |
| SUPERFAMILY | 293 | 600 | 308 | 2.35E-34 | ||
| Gene3D | 294 | 593 | 300 | 2.30E-25 | – | |
| TMHMM | 299 | 318 | 20 | – | – | |
| Phobius | 299 | 320 | 22 | – | – | |
| ProSiteProfiles | 300 | 580 | 281 | 33.982 | ||
| Pfam | 300 | 567 | 268 | 7.70E-25 | ||
| Phobius | 321 | 331 | 11 | – | – | |
| Phobius | 332 | 353 | 22 | – | – | |
| TMHMM | 338 | 360 | 23 | – | – | |
| Phobius | 354 | 410 | 57 | – | – | |
| TMHMM | 410 | 432 | 23 | – | – | |
| Phobius | 411 | 433 | 23 | – | – | |
| Phobius | 434 | 438 | 5 | – | – | |
| TMHMM | 436 | 458 | 23 | – | – | |
| Phobius | 439 | 460 | 22 | – | – | |
| Phobius | 461 | 515 | 55 | – | – | |
| Phobius | 516 | 549 | 34 | – | – | |
| TMHMM | 525 | 547 | 23 | – | – | |
| Phobius | 550 | 780 | 231 | – | – | |
| SUPERFAMILY | 611 | 779 | 169 | 1.23E-42 | ||
| Gene3D | 612 | 779 | 168 | 1.00E-49 | ||
| ProSiteProfiles | 614 | 780 | 167 | 10.818 | ||
| CDD | 614 | 779 | 166 | 9.69E-93 | – | |
| Pfam | 632 | 766 | 135 | 8.80E-21 | ||
| ProSitePatterns | 739 | 753 | 15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj3g3v3247340.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3247340.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.