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| Field | Value |
|---|---|
| Gene ID | Lj3g3v3639830 |
| Transcript ID | Lj3g3v3639830.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g30610, chloroplastic-like [Glycine max] gi|356541058|ref|XP_003539000.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 156 | 372 | 217 | – | – | |
| PANTHER | 470 | 891 | 422 | 3.20E-274 | – | |
| PANTHER | 470 | 891 | 422 | 3.20E-274 | – | |
| ProSiteProfiles | 506 | 536 | 31 | 5.283 | ||
| ProSiteProfiles | 544 | 574 | 31 | 6.654 | ||
| Pfam | 547 | 573 | 27 | 0.22 | ||
| Gene3D | 559 | 597 | 39 | 2.40E-12 | ||
| ProSiteProfiles | 580 | 610 | 31 | 6.27 | ||
| Pfam | 629 | 673 | 45 | 6.70E-08 | ||
| ProSiteProfiles | 630 | 664 | 35 | 11.367 | ||
| TIGRFAM | 632 | 664 | 33 | 5.50E-04 | ||
| SUPERFAMILY | 636 | 832 | 197 | 7.33E-09 | ||
| ProSiteProfiles | 665 | 695 | 31 | 6.193 | ||
| ProSiteProfiles | 699 | 733 | 35 | 9.953 | ||
| Gene3D | 702 | 832 | 131 | 2.40E-12 | ||
| TIGRFAM | 702 | 733 | 32 | 0.003 | ||
| Pfam | 702 | 731 | 30 | 0.012 | ||
| ProSiteProfiles | 734 | 768 | 35 | 6.314 | ||
| Pfam | 768 | 814 | 47 | 5.40E-09 | ||
| ProSiteProfiles | 769 | 799 | 31 | 6.719 | ||
| ProSiteProfiles | 803 | 833 | 31 | 11.005 | ||
| TIGRFAM | 805 | 833 | 29 | 8.30E-07 | ||
| Coils | 820 | 844 | 25 | – | – | |
| ProSiteProfiles | 850 | 884 | 35 | 9.394 | ||
| Pfam | 852 | 881 | 30 | 0.096 | ||
| TIGRFAM | 852 | 878 | 27 | 2.90E-04 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj3g3v3639830.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v3639830.1, powered by CORGI.
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