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Lj3g3v3752290.2

Overview

Field Value
Gene ID Lj3g3v3752290
Transcript ID Lj3g3v3752290.2
Related isoforms 2
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: TATA-binding protein-associated factor 172-like [Glycine max] gi|356543311|ref|XP_003540105.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR36498
1 349 349 1.50E-128 –
Gene3D
G3DSA:1.25.10.10
5 88 84 1.80E-77
IPR011989
SUPERFAMILY
SSF48371
6 72 67 1.15E-69
IPR016024
Gene3D
G3DSA:1.25.10.10
284 362 79 1.80E-77
IPR011989
SUPERFAMILY
SSF48371
292 337 46 1.15E-69
IPR016024
PANTHER
PTHR36498
499 667 169 1.50E-128 –
SUPERFAMILY
SSF48371
515 817 303 1.15E-69
IPR016024
Gene3D
G3DSA:1.25.10.10
518 823 306 1.80E-77
IPR011989
PANTHER
PTHR36498
690 810 121 1.50E-128 –
Pfam
PF12054
783 1237 455 3.90E-103
IPR022707
SUPERFAMILY
SSF48371
890 927 38 1.15E-69
IPR016024
Gene3D
G3DSA:1.25.10.10
892 975 84 1.80E-77
IPR011989
SUPERFAMILY
SSF48371
1115 1168 54 1.15E-69
IPR016024
Gene3D
G3DSA:1.25.10.10
1121 1586 466 1.80E-77
IPR011989
SUPERFAMILY
SSF48371
1214 1493 280 1.15E-69
IPR016024
SUPERFAMILY
SSF52540
1433 1686 254 1.26E-54
IPR027417
SMART
SM00487
1450 1646 197 7.50E-28
IPR014001
ProSiteProfiles
PS51192
1466 1636 171 20.248
IPR014001
Pfam
PF00176
1472 1745 274 3.60E-56
IPR000330
CDD
cd00046
1474 1618 145 1.96E-17 –
MobiDBLite
mobidb-lite
1725 1756 32 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

Genome browser

LORE1 insertions 19

Expression data

Expression pattern

Expression pattern of Lj3g3v3752290.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3752290.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.