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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0000060 |
| Transcript ID | Lj4g3v0000060.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: chloride channel protein CLC-c-like [Cicer arietinum] gi|502126612|ref|XP_004499372.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 384 | 384 | 0 | – | |
| PANTHER | 1 | 384 | 384 | 0 | – | |
| Phobius | 1 | 75 | 75 | – | – | |
| CDD | 49 | 571 | 523 | 0 | – | |
| PRINTS | 54 | 62 | 9 | 8.20E-22 | ||
| SUPERFAMILY | 58 | 385 | 328 | 9.42E-103 | ||
| Gene3D | 66 | 385 | 320 | 6.80E-124 | ||
| TMHMM | 76 | 98 | 23 | – | – | |
| Phobius | 76 | 97 | 22 | – | – | |
| Phobius | 98 | 125 | 28 | – | – | |
| TMHMM | 125 | 147 | 23 | – | – | |
| Phobius | 126 | 147 | 22 | – | – | |
| Pfam | 136 | 552 | 417 | 5.40E-93 | ||
| Phobius | 148 | 237 | 90 | – | – | |
| PRINTS | 149 | 166 | 18 | 4.30E-62 | ||
| TMHMM | 168 | 190 | 23 | – | – | |
| PRINTS | 180 | 199 | 20 | 4.30E-62 | ||
| Phobius | 238 | 261 | 24 | – | – | |
| TMHMM | 238 | 260 | 23 | – | – | |
| PRINTS | 244 | 263 | 20 | 4.30E-62 | ||
| Phobius | 262 | 272 | 11 | – | – | |
| PRINTS | 265 | 273 | 9 | 8.20E-22 | ||
| TMHMM | 272 | 294 | 23 | – | – | |
| Phobius | 273 | 292 | 20 | – | – | |
| PRINTS | 279 | 289 | 11 | 8.20E-22 | ||
| Phobius | 293 | 324 | 32 | – | – | |
| PRINTS | 297 | 304 | 8 | 8.20E-22 | ||
| TMHMM | 320 | 342 | 23 | – | – | |
| Phobius | 325 | 345 | 21 | – | – | |
| Phobius | 346 | 364 | 19 | – | – | |
| TMHMM | 363 | 385 | 23 | – | – | |
| Phobius | 365 | 385 | 21 | – | – | |
| Phobius | 386 | 450 | 65 | – | – | |
| PANTHER | 414 | 763 | 350 | 0 | – | |
| PANTHER | 414 | 763 | 350 | 0 | – | |
| PRINTS | 422 | 438 | 17 | 8.20E-22 | ||
| Gene3D | 427 | 576 | 150 | 6.80E-124 | ||
| SUPERFAMILY | 427 | 573 | 147 | 9.42E-103 | ||
| Phobius | 451 | 480 | 30 | – | – | |
| TMHMM | 453 | 475 | 23 | – | – | |
| PRINTS | 470 | 490 | 21 | 4.30E-62 | ||
| Phobius | 481 | 491 | 11 | – | – | |
| TMHMM | 488 | 510 | 23 | – | – | |
| Phobius | 492 | 513 | 22 | – | – | |
| PRINTS | 502 | 518 | 17 | 4.30E-62 | ||
| Phobius | 514 | 524 | 11 | – | – | |
| PRINTS | 520 | 539 | 20 | 4.30E-62 | ||
| TMHMM | 525 | 547 | 23 | – | – | |
| Phobius | 525 | 546 | 22 | – | – | |
| Phobius | 547 | 763 | 217 | – | – | |
| PRINTS | 558 | 572 | 15 | 4.30E-62 | ||
| SUPERFAMILY | 575 | 749 | 175 | 6.83E-24 | – | |
| Gene3D | 580 | 649 | 70 | 1.80E-11 | – | |
| ProSiteProfiles | 587 | 649 | 63 | 6.979 | ||
| CDD | 594 | 749 | 156 | 2.63E-20 | – | |
| Gene3D | 687 | 749 | 63 | 1.80E-11 | – | |
| ProSiteProfiles | 699 | 762 | 64 | 9.485 | ||
| Pfam | 700 | 748 | 49 | 3.90E-04 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Voltage-gated chloride channel activity | Enables the transmembrane transfer of a chloride ion by a voltage-gated channel. A voltage-gated channel is a channel whose open state is dependent on the voltage across the membrane in which it is embedded. | ||
| Biological process | Chloride transport | The directed movement of chloride into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj4g3v0000060.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0000060.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.