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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0166330 |
| Transcript ID | Lj4g3v0166330.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: vacuolar protein sorting-associated protein 72 homolog [Cicer arietinum] gi|502141750|ref|XP_004504620.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 367 | 367 | 6.60E-94 | ||
| Pfam | 17 | 243 | 227 | 2.30E-35 | – | |
| MobiDBLite | 47 | 155 | 109 | – | – | |
| Coils | 186 | 220 | 35 | – | – | |
| SMART | 273 | 302 | 30 | 4.30E-16 | ||
| Pfam | 274 | 302 | 29 | 1.70E-17 | ||
| MobiDBLite | 333 | 367 | 35 | – | – | |
| Coils | 365 | 367 | 3 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Chromatin remodeling | Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation. | ||
| Biological process | Regulation of transcription, DNA-templated | Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription. | ||
| Biological process | Histone exchange | The replacement, within chromatin, of resident histones or histone subunits with alternative, sometimes variant, histones or subunits. |
Expression pattern of Lj4g3v0166330.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0166330.1, powered by CORGI.
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