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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0335810 |
| Transcript ID | Lj4g3v0335810.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At1g62260, mitochondrial-like [Glycine max] gi|356510733|ref|XP_003524089.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SignalP | 1 | 19 | 19 | – | – | |
| PANTHER | 29 | 192 | 164 | 0 | – | |
| PANTHER | 29 | 192 | 164 | 0 | – | |
| ProSiteProfiles | 35 | 65 | 31 | 6.818 | ||
| SUPERFAMILY | 37 | 194 | 158 | 8.06E-05 | ||
| Pfam | 66 | 97 | 32 | 2.70E-08 | ||
| ProSiteProfiles | 66 | 100 | 35 | 11.531 | ||
| TIGRFAM | 68 | 99 | 32 | 3.10E-08 | ||
| ProSiteProfiles | 101 | 130 | 30 | 5.744 | ||
| Pfam | 130 | 158 | 29 | 3.40E-10 | ||
| ProSiteProfiles | 131 | 165 | 35 | 12.441 | ||
| TIGRFAM | 133 | 162 | 30 | 1.70E-08 | ||
| Gene3D | 141 | 194 | 54 | 1.70E-12 | ||
| Pfam | 164 | 192 | 29 | 0.0013 | ||
| ProSiteProfiles | 193 | 223 | 31 | 6.38 | ||
| Pfam | 197 | 218 | 22 | 0.18 | ||
| SUPERFAMILY | 223 | 393 | 171 | 1.65E-06 | – | |
| PANTHER | 226 | 646 | 421 | 0 | – | |
| PANTHER | 226 | 646 | 421 | 0 | – | |
| Gene3D | 229 | 394 | 166 | 1.70E-12 | ||
| ProSiteProfiles | 230 | 260 | 31 | 9.383 | ||
| TIGRFAM | 233 | 257 | 25 | 5.80E-06 | ||
| Pfam | 233 | 257 | 25 | 1.80E-06 | ||
| ProSiteProfiles | 274 | 308 | 35 | 10.194 | ||
| TIGRFAM | 276 | 305 | 30 | 4.50E-06 | ||
| Pfam | 276 | 304 | 29 | 1.60E-06 | ||
| Pfam | 308 | 333 | 26 | 2.00E-07 | ||
| TIGRFAM | 308 | 332 | 25 | 3.30E-06 | ||
| ProSiteProfiles | 309 | 335 | 27 | 6.982 | ||
| Pfam | 334 | 363 | 30 | 1.40E-05 | ||
| ProSiteProfiles | 336 | 366 | 31 | 9.865 | ||
| TIGRFAM | 339 | 366 | 28 | 2.70E-04 | ||
| Pfam | 366 | 413 | 48 | 7.00E-10 | ||
| ProSiteProfiles | 367 | 401 | 35 | 11.159 | ||
| TIGRFAM | 369 | 402 | 34 | 2.40E-05 | ||
| ProSiteProfiles | 436 | 466 | 31 | 7.541 | ||
| Pfam | 441 | 464 | 24 | 0.0028 | ||
| Pfam | 467 | 515 | 49 | 1.10E-11 | ||
| ProSiteProfiles | 468 | 502 | 35 | 12.595 | ||
| TIGRFAM | 470 | 503 | 34 | 8.70E-08 | ||
| ProSiteProfiles | 503 | 538 | 36 | 8.133 | ||
| ProSiteProfiles | 539 | 569 | 31 | 6.566 | ||
| Pfam | 545 | 567 | 23 | 0.71 | ||
| Gene3D | 599 | 625 | 27 | 1.70E-12 | ||
| ProSiteProfiles | 605 | 639 | 35 | 6.939 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v0335810.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0335810.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.