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| Field | Value |
|---|---|
| Gene ID | Lj4g3v0756950 |
| Transcript ID | Lj4g3v0756950.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357476491|ref|XP_003608531.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 14 | 47 | 34 | 5.70E-145 | – | |
| PANTHER | 14 | 47 | 34 | 5.70E-145 | – | |
| PANTHER | 164 | 548 | 385 | 5.70E-145 | – | |
| PANTHER | 164 | 548 | 385 | 5.70E-145 | – | |
| ProSiteProfiles | 255 | 285 | 31 | 8.177 | ||
| Pfam | 258 | 284 | 27 | 0.0052 | ||
| TIGRFAM | 258 | 291 | 34 | 1.60E-05 | ||
| Gene3D | 259 | 308 | 50 | 5.70E-05 | ||
| ProSiteProfiles | 291 | 321 | 31 | 6.38 | ||
| Pfam | 337 | 383 | 47 | 1.10E-06 | ||
| ProSiteProfiles | 340 | 374 | 35 | 10.633 | ||
| ProSiteProfiles | 375 | 409 | 35 | 8.177 | ||
| Gene3D | 378 | 539 | 162 | 5.70E-05 | ||
| ProSiteProfiles | 410 | 444 | 35 | 9.756 | ||
| SUPERFAMILY | 410 | 475 | 66 | 3.57E-05 | ||
| TIGRFAM | 413 | 442 | 30 | 0.0028 | ||
| Pfam | 413 | 442 | 30 | 0.0011 | ||
| ProSiteProfiles | 481 | 511 | 31 | 5.722 | ||
| Pfam | 483 | 529 | 47 | 4.40E-04 | ||
| ProSiteProfiles | 515 | 545 | 31 | 7.289 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v0756950.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v0756950.2, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.