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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1140660 |
| Transcript ID | Lj4g3v1140660.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like [Cicer arietinum] gi|502152617|ref|XP_004509010.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 24 | 117 | 94 | – | – | |
| PANTHER | 71 | 508 | 438 | 2.60E-255 | – | |
| PANTHER | 71 | 508 | 438 | 2.60E-255 | – | |
| ProSiteProfiles | 187 | 221 | 35 | 6.292 | ||
| ProSiteProfiles | 222 | 256 | 35 | 9.679 | ||
| Pfam | 224 | 251 | 28 | 0.055 | ||
| TIGRFAM | 224 | 258 | 35 | 9.40E-05 | ||
| Gene3D | 239 | 357 | 119 | 3.70E-10 | ||
| SUPERFAMILY | 240 | 465 | 226 | 2.20E-06 | – | |
| Pfam | 256 | 303 | 48 | 1.50E-07 | ||
| ProSiteProfiles | 257 | 291 | 35 | 11.466 | ||
| TIGRFAM | 259 | 292 | 34 | 3.10E-05 | ||
| ProSiteProfiles | 292 | 326 | 35 | 9.679 | ||
| TIGRFAM | 294 | 327 | 34 | 7.20E-04 | ||
| Pfam | 326 | 372 | 47 | 3.80E-11 | ||
| ProSiteProfiles | 327 | 361 | 35 | 12.419 | ||
| TIGRFAM | 329 | 363 | 35 | 1.80E-08 | ||
| ProSiteProfiles | 362 | 396 | 35 | 10.216 | ||
| TIGRFAM | 365 | 397 | 33 | 3.80E-06 | ||
| Gene3D | 394 | 462 | 69 | 3.70E-10 | ||
| ProSiteProfiles | 397 | 431 | 35 | 10.238 | ||
| Pfam | 400 | 427 | 28 | 1.30E-05 | ||
| TIGRFAM | 400 | 433 | 34 | 2.80E-07 | ||
| Pfam | 432 | 480 | 49 | 8.00E-10 | ||
| ProSiteProfiles | 433 | 467 | 35 | 12.079 | ||
| TIGRFAM | 436 | 469 | 34 | 1.80E-07 | ||
| ProSiteProfiles | 468 | 502 | 35 | 7.388 | ||
| PANTHER | 576 | 647 | 72 | 2.60E-255 | – | |
| PANTHER | 576 | 647 | 72 | 2.60E-255 | – | |
| ProSiteProfiles | 616 | 699 | 84 | 10.858 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of Lj4g3v1140660.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1140660.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.