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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR002625
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 28 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 8.085s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0018339.1
n.a. smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana] gi|15237740|ref|NP_200680.1| chr0 7204272 7206975 +
5 domain predictions
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Lj0g3v0059929.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532365|ref|XP_003534744.1| chr0 19910883 19913101 +
3 domain predictions
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Lj0g3v0059959.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532361|ref|XP_003534742.1| chr0 19917774 19920509 +
3 domain predictions
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Lj0g3v0258519.1
n.a. Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357502615|ref|XP_003621596.1| chr0 134208502 134212249 -
4 domain predictions
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Lj1g3v0449040.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g18900-like [Glycine max] gi|356516744|ref|XP_003527053.1| chr1 6006670 6007306 -
4 domain predictions
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Lj1g3v2908510.1
n.a. Smr protein/MutS2 C-terminal [Medicago truncatula] gi|124359484|gb|ABN05922.1| chr1 32753286 32757217 +
5 domain predictions
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Lj4g3v0109500.1
n.a. n.a. chr4 980169 987041 -
3 domain predictions
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Lj4g3v0231930.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial-like [Cicer arietinum] gi|502141840|ref|XP_004504664.1| chr4 2849377 2853931 +
3 domain predictions
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Lj4g3v0451120.1
n.a. PREDICTED: mutS2 protein-like isoform 1 [Glycine max] gi|356521349|ref|XP_003529319.1| chr4 6604124 6609735 -
5 domain predictions
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Lj4g3v0451120.2
n.a. PREDICTED: mutS2 protein-like isoform 1 [Glycine max] gi|356521349|ref|XP_003529319.1| chr4 6604124 6609735 -
5 domain predictions
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Lj4g3v1140660.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like [Cicer arietinum] gi|502152617|ref|XP_004509010.1| chr4 17047194 17049982 -
2 domain predictions
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Lj4g3v1584860.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic-like [Cicer arietinum] gi|502152195|ref|XP_004508810.1| chr4 23335139 23340203 +
3 domain predictions
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Lj5g3v0470290.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Glycine max] gi|356518183|ref|XP_003527761.1| chr5 4587337 4593140 +
3 domain predictions
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Lj5g3v2258310.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At2g17033-like [Glycine max] gi|356574131|ref|XP_003555205.1| chr5 32730555 32734365 +
4 domain predictions
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Lj6g3v1722680.1
n.a. PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532361|ref|XP_003534742.1| chr6 19517242 19519814 +
3 domain predictions
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LotjaGi1g1v0188000.1
n.a. Pentatricopeptide repeat-containing protein family; TAIR: AT1G18900.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900; TrEMBL-Plants: tr|A0A151S797|A0A151S797_CAJCA Pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi1g1v0188000 LjG1.1_chr1 36802409 36806720 -
3 domain predictions
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LotjaGi1g1v0372100.1
n.a. Smr domain-containing protein; TAIR: AT2G26280.1 CTC-interacting domain 7; Swiss-Prot: sp|O64843|CID7_ARATH Polyadenylate-binding protein-interacting protein 7; TrEMBL-Plants: tr|A0A0L9UH72|A0A0L9UH72_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0372100 LjG1.1_chr1 85019498 85024066 +
2 domain predictions
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LotjaGi1g1v0492900.1
n.a. Smr (Small MutS-related) domain protein; TAIR: AT5G23520.1 smr (Small MutS Related) domain-containing protein; Swiss-Prot: sp|Q86UW6|N4BP2_HUMAN NEDD4-binding protein 2; TrEMBL-Plants: tr|K7LFV6|K7LFV6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0492900 LjG1.1_chr1 100641347 100645609 +
4 domain predictions
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LotjaGi1g1v0521700.1
n.a. Pentatricopeptide repeat-containing protein, putative; TAIR: AT2G31400.1 s uncoupled 1; Swiss-Prot: sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic; TrEMBL-Plants: tr|G7KS10|G7KS10_MEDTR PPR containing plant protein; Found in the gene: LotjaGi1g1v0521700 LjG1.1_chr1 104608528 104612606 +
3 domain predictions
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LotjaGi4g1v0021300.1
n.a. Pentatricopeptide repeat-containing family protein; TAIR: AT1G79490.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490, mitochondrial; TrEMBL-Plants: tr|A0A072UP25|A0A072UP25_MEDTR PPR containing plant protein; Found in the gene: LotjaGi4g1v0021300 LjG1.1_chr4 2607885 2612607 +
3 domain predictions
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LotjaGi4g1v0021300.2
n.a. Pentatricopeptide repeat-containing family protein; TAIR: AT1G79490.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490, mitochondrial; TrEMBL-Plants: tr|A0A072UP25|A0A072UP25_MEDTR PPR containing plant protein; Found in the gene: LotjaGi4g1v0021300 LjG1.1_chr4 2607947 2612527 +
3 domain predictions
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LotjaGi4g1v0021300.3
n.a. Pentatricopeptide repeat-containing family protein; TAIR: AT1G79490.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490, mitochondrial; TrEMBL-Plants: tr|A0A072UP25|A0A072UP25_MEDTR PPR containing plant protein; Found in the gene: LotjaGi4g1v0021300 LjG1.1_chr4 2608082 2610601 +
3 domain predictions
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LotjaGi4g1v0055400.1
n.a. DNA mismatch repair protein MutS2; TAIR: AT1G65070.2 DNA mismatch repair protein MutS, type 2; Swiss-Prot: sp|P73625|MUTS2_SYNY3 Endonuclease MutS2; TrEMBL-Plants: tr|I1KLI9|I1KLI9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0055400 LjG1.1_chr4 6679674 6685055 -
4 domain predictions
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LotjaGi4g1v0242000.1
n.a. Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G74850.1 plastid transcriptionally active 2; Swiss-Prot: sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic; TrEMBL-Plants: tr|K7MKT2|K7MKT2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0242000 LjG1.1_chr4 59017277 59022978 +
3 domain predictions
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LotjaGi5g1v0048800.1
n.a. Smr domain-containing protein; TAIR: AT2G26280.1 CTC-interacting domain 7; Swiss-Prot: sp|O64843|CID7_ARATH Polyadenylate-binding protein-interacting protein 7; TrEMBL-Plants: tr|A0A072VDP3|A0A072VDP3_MEDTR Smr (Small MutS-related) domain protein; Found in the gene: LotjaGi5g1v0048800 LjG1.1_chr5 8148384 8152956 +
4 domain predictions
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LotjaGi5g1v0351300.1
n.a. Pentatricopeptide repeat-containing protein; TAIR: AT2G17033.1 pentatricopeptide (PPR) repeat-containing protein; Swiss-Prot: sp|Q8GWA9|PP157_ARATH Pentatricopeptide repeat-containing protein At2g17033; TrEMBL-Plants: tr|A0A1J7HIQ9|A0A1J7HIQ9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0351300 LjG1.1_chr5 66723959 66726932 +
3 domain predictions
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LotjaGi6g1v0113600.1
n.a. Smr domain-containing protein, putative; TAIR: AT5G58720.1 smr (Small MutS Related) domain-containing protein; Swiss-Prot: sp|O65573|Y5872_ARATH SMR domain-containing protein At5g58720; TrEMBL-Plants: tr|A0A1J7H576|A0A1J7H576_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0113600 LjG1.1_chr6 27208552 27215554 -
4 domain predictions
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LotjaGi6g1v0283400.1
n.a. Pentatricopeptide repeat-containing protein; TAIR: AT4G16390.1 pentatricopeptide (PPR) repeat-containing protein; Swiss-Prot: sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390, chloroplastic; TrEMBL-Plants: tr|I1L028|I1L028_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0283400 LjG1.1_chr6 59997044 59999347 +
3 domain predictions
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