Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

IPR002625

Source: InterPro

Description

IPR002625 is a Smr domain.

<p>The Smr domain is an around 90-residue domain found in:</p> <ul> <li>The C-terminal region of the MutS2 proteins from bacteria and plants.</li> <li>The small MutS related (Smr) proteins from bacteria and eukaryotes.</li> </ul> <p>These proteins could be involved in mismatch repair (MMR) or/and chromosome crossing-over and segregation. It has been proposed that the Smr domain acts as a nicking endonuclease [[cite:PUB00005494], [cite:PUB00018300]].</p>

This description is obtained from EB-eye REST.

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 28

Transcript Name Description Predicted domains Domain count
Lj0g3v0018339.1
– Smr (Small MutS Related) domain-containing protein [Arabidopsis thaliana] gi|15237740|ref|NP_200680.1|
Domains
10
Lj0g3v0059929.1
– PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532365|ref|XP_003534744.1|
Domains
15
Lj0g3v0059959.1
– PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532361|ref|XP_003534742.1|
Domains
16
Lj0g3v0258519.1
– Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|357502615|ref|XP_003621596.1|
Domains
16
Lj1g3v0449040.1
– PREDICTED: pentatricopeptide repeat-containing protein At1g18900-like [Glycine max] gi|356516744|ref|XP_003527053.1|
Domains
4
Lj1g3v2908510.1
– Smr protein/MutS2 C-terminal [Medicago truncatula] gi|124359484|gb|ABN05922.1|
Domains
10
Lj4g3v0109500.1
–
Domains
17
Lj4g3v0231930.1
– PREDICTED: pentatricopeptide repeat-containing protein At1g79490, mitochondrial-like [Cicer arietinum] gi|502141840|ref|XP_004504664.1|
Domains
12
Lj4g3v0451120.1
– PREDICTED: mutS2 protein-like isoform 1 [Glycine max] gi|356521349|ref|XP_003529319.1|
Domains
21
Lj4g3v0451120.2
– PREDICTED: mutS2 protein-like isoform 1 [Glycine max] gi|356521349|ref|XP_003529319.1|
Domains
21
Lj4g3v1140660.1
– PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like [Cicer arietinum] gi|502152617|ref|XP_004509010.1|
Domains
13
Lj4g3v1584860.1
– PREDICTED: pentatricopeptide repeat-containing protein At1g74850, chloroplastic-like [Cicer arietinum] gi|502152195|ref|XP_004508810.1|
Domains
15
Lj5g3v0470290.1
– PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like [Glycine max] gi|356518183|ref|XP_003527761.1|
Domains
10
Lj5g3v2258310.1
– PREDICTED: pentatricopeptide repeat-containing protein At2g17033-like [Glycine max] gi|356574131|ref|XP_003555205.1|
Domains
10
Lj6g3v1722680.1
– PREDICTED: pentatricopeptide repeat-containing protein At4g16390, chloroplastic-like [Glycine max] gi|356532361|ref|XP_003534742.1|
Domains
16
LotjaGi1g1v0188000.1
– Pentatricopeptide repeat-containing protein family; TAIR: AT1G18900.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q8GYP6|PPR49_ARATH Pentatricopeptide repeat-containing protein At1g18900; TrEMBL-Plants: tr|A0A151S797|A0A151S797_CAJCA Pentatricopeptide repeat-containing protein family; Found in the gene: LotjaGi1g1v0188000
Domains
22
LotjaGi1g1v0372100.1
– Smr domain-containing protein; TAIR: AT2G26280.1 CTC-interacting domain 7; Swiss-Prot: sp|O64843|CID7_ARATH Polyadenylate-binding protein-interacting protein 7; TrEMBL-Plants: tr|A0A0L9UH72|A0A0L9UH72_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0372100
Domains
12
LotjaGi1g1v0492900.1
– Smr (Small MutS-related) domain protein; TAIR: AT5G23520.1 smr (Small MutS Related) domain-containing protein; Swiss-Prot: sp|Q86UW6|N4BP2_HUMAN NEDD4-binding protein 2; TrEMBL-Plants: tr|K7LFV6|K7LFV6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0492900
Domains
12
LotjaGi1g1v0521700.1
– Pentatricopeptide repeat-containing protein, putative; TAIR: AT2G31400.1 s uncoupled 1; Swiss-Prot: sp|Q9SIC9|PP178_ARATH Pentatricopeptide repeat-containing protein At2g31400, chloroplastic; TrEMBL-Plants: tr|G7KS10|G7KS10_MEDTR PPR containing plant protein; Found in the gene: LotjaGi1g1v0521700
Domains
16
LotjaGi4g1v0021300.1
– Pentatricopeptide repeat-containing family protein; TAIR: AT1G79490.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490, mitochondrial; TrEMBL-Plants: tr|A0A072UP25|A0A072UP25_MEDTR PPR containing plant protein; Found in the gene: LotjaGi4g1v0021300
Domains
11
LotjaGi4g1v0021300.2
– Pentatricopeptide repeat-containing family protein; TAIR: AT1G79490.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490, mitochondrial; TrEMBL-Plants: tr|A0A072UP25|A0A072UP25_MEDTR PPR containing plant protein; Found in the gene: LotjaGi4g1v0021300
Domains
11
LotjaGi4g1v0021300.3
– Pentatricopeptide repeat-containing family protein; TAIR: AT1G79490.1 Pentatricopeptide repeat (PPR) superfamily protein; Swiss-Prot: sp|Q9SAK0|PP132_ARATH Pentatricopeptide repeat-containing protein At1g79490, mitochondrial; TrEMBL-Plants: tr|A0A072UP25|A0A072UP25_MEDTR PPR containing plant protein; Found in the gene: LotjaGi4g1v0021300
Domains
11
LotjaGi4g1v0055400.1
– DNA mismatch repair protein MutS2; TAIR: AT1G65070.2 DNA mismatch repair protein MutS, type 2; Swiss-Prot: sp|P73625|MUTS2_SYNY3 Endonuclease MutS2; TrEMBL-Plants: tr|I1KLI9|I1KLI9_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0055400
Domains
24
LotjaGi4g1v0242000.1
– Pentatricopeptide repeat-containing protein, putative; TAIR: AT1G74850.1 plastid transcriptionally active 2; Swiss-Prot: sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic; TrEMBL-Plants: tr|K7MKT2|K7MKT2_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0242000
Domains
14
LotjaGi5g1v0048800.1
– Smr domain-containing protein; TAIR: AT2G26280.1 CTC-interacting domain 7; Swiss-Prot: sp|O64843|CID7_ARATH Polyadenylate-binding protein-interacting protein 7; TrEMBL-Plants: tr|A0A072VDP3|A0A072VDP3_MEDTR Smr (Small MutS-related) domain protein; Found in the gene: LotjaGi5g1v0048800
Domains
16
LotjaGi5g1v0351300.1
– Pentatricopeptide repeat-containing protein; TAIR: AT2G17033.1 pentatricopeptide (PPR) repeat-containing protein; Swiss-Prot: sp|Q8GWA9|PP157_ARATH Pentatricopeptide repeat-containing protein At2g17033; TrEMBL-Plants: tr|A0A1J7HIQ9|A0A1J7HIQ9_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0351300
Domains
13
LotjaGi6g1v0113600.1
– Smr domain-containing protein, putative; TAIR: AT5G58720.1 smr (Small MutS Related) domain-containing protein; Swiss-Prot: sp|O65573|Y5872_ARATH SMR domain-containing protein At5g58720; TrEMBL-Plants: tr|A0A1J7H576|A0A1J7H576_LUPAN Uncharacterized protein; Found in the gene: LotjaGi6g1v0113600
Domains
12
LotjaGi6g1v0283400.1
– Pentatricopeptide repeat-containing protein; TAIR: AT4G16390.1 pentatricopeptide (PPR) repeat-containing protein; Swiss-Prot: sp|Q8GWE0|PP314_ARATH Pentatricopeptide repeat-containing protein At4g16390, chloroplastic; TrEMBL-Plants: tr|I1L028|I1L028_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0283400
Domains
20

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain Source Observations Saturation (%)
mobidb-lite MobiDBLite 1 3.57