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Lj4g3v1214960.1

Overview

Field Value
Gene ID Lj4g3v1214960
Transcript ID Lj4g3v1214960.1
Lotus japonicus genome version MG20 v3.0
Description
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF57903
39 89 51 3.70E-11
IPR011011
Gene3D
G3DSA:3.30.40.10
41 88 48 4.70E-12
IPR013083
PANTHER
PTHR24098:SF9
43 243 201 1.50E-59 –
PANTHER
PTHR24098
43 243 201 1.50E-59 –
ProSiteProfiles
PS50016
45 89 45 9
IPR019787
SMART
SM00249
47 87 41 1.50E-07
IPR001965
ProSitePatterns
PS01359
48 86 39 –
IPR019786
Pfam
PF00628
48 86 39 5.60E-07
IPR019787
SUPERFAMILY
SSF57903
87 120 34 6.87E-05
IPR011011
SMART
SM00249
88 132 45 14
IPR001965
Gene3D
G3DSA:3.30.40.10
89 120 32 6.70E-05
IPR013083
Coils
Coil
242 243 2 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

Unable to find any GO terms for the transcript with the identifier.

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj4g3v1214960.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1214960.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.