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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1345780 |
| Transcript ID | Lj4g3v1345780.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: pentatricopeptide repeat-containing protein At5g39350-like [Glycine max] gi|356495419|ref|XP_003516575.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| ProSiteProfiles | 7 | 41 | 35 | 5.196 | ||
| PANTHER | 26 | 312 | 287 | 0 | – | |
| PANTHER | 26 | 312 | 287 | 0 | – | |
| ProSiteProfiles | 74 | 108 | 35 | 11.575 | ||
| Pfam | 75 | 121 | 47 | 1.50E-10 | ||
| TIGRFAM | 76 | 107 | 32 | 2.30E-07 | ||
| SUPERFAMILY | 81 | 203 | 123 | 2.77E-06 | ||
| ProSiteProfiles | 110 | 144 | 35 | 5.81 | ||
| ProSiteProfiles | 145 | 175 | 31 | 7.739 | ||
| Gene3D | 156 | 209 | 54 | 1.10E-08 | ||
| ProSiteProfiles | 176 | 210 | 35 | 13.724 | ||
| Pfam | 176 | 222 | 47 | 1.30E-12 | ||
| TIGRFAM | 178 | 212 | 35 | 3.00E-12 | ||
| ProSiteProfiles | 211 | 245 | 35 | 5.272 | ||
| ProSiteProfiles | 246 | 276 | 31 | 8.517 | ||
| Pfam | 251 | 275 | 25 | 0.0018 | ||
| SUPERFAMILY | 253 | 287 | 35 | 2.77E-06 | ||
| Pfam | 277 | 323 | 47 | 5.90E-08 | ||
| ProSiteProfiles | 277 | 311 | 35 | 10.852 | ||
| TIGRFAM | 279 | 312 | 34 | 1.40E-05 | ||
| ProSiteProfiles | 312 | 346 | 35 | 5.305 | ||
| PANTHER | 348 | 644 | 297 | 0 | – | |
| PANTHER | 348 | 644 | 297 | 0 | – | |
| Gene3D | 376 | 437 | 62 | 1.10E-08 | ||
| ProSiteProfiles | 378 | 412 | 35 | 10.161 | ||
| Pfam | 381 | 424 | 44 | 1.50E-10 | ||
| TIGRFAM | 382 | 413 | 32 | 5.30E-06 | ||
| ProSiteProfiles | 413 | 447 | 35 | 8.002 | ||
| Pfam | 480 | 528 | 49 | 2.50E-13 | ||
| ProSiteProfiles | 481 | 515 | 35 | 12.156 | ||
| Gene3D | 484 | 579 | 96 | 1.10E-08 | ||
| TIGRFAM | 484 | 516 | 33 | 1.10E-07 | ||
| SUPERFAMILY | 489 | 515 | 27 | 2.77E-06 | ||
| ProSiteProfiles | 516 | 546 | 31 | 9.229 | ||
| TIGRFAM | 518 | 546 | 29 | 2.60E-04 | ||
| SUPERFAMILY | 551 | 648 | 98 | 2.77E-06 | ||
| ProSiteProfiles | 552 | 582 | 31 | 6.533 | ||
| Pfam | 555 | 579 | 25 | 0.15 | ||
| Gene3D | 612 | 641 | 30 | 1.10E-08 | ||
| Pfam | 664 | 723 | 60 | 1.50E-15 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Cellular component | 1,3-beta-D-glucan synthase complex | A protein complex that catalyzes the transfer of a glucose group from UDP-glucose to a (1->3)-beta-D-glucan chain. | ||
| Molecular function | 1,3-beta-D-glucan synthase activity | Catalysis of the reaction: UDP-glucose + [(1->3)-beta-D-glucosyl](n) = UDP + [(1->3)-beta-D-glucosyl](n+1). | ||
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | (1->3)-beta-D-glucan biosynthetic process | The chemical reactions and pathways resulting in the formation of (1->3)-beta-D-glucans, compounds composed of glucose residues linked by (1->3)-beta-D-glucosidic bonds. | ||
| Cellular component | Membrane | A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it. |
Expression pattern of Lj4g3v1345780.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1345780.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.