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| Field | Value |
|---|---|
| Gene ID | Lj4g3v1512530 |
| Transcript ID | Lj4g3v1512530.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: E3 ubiquitin-protein ligase SIS3-like [Glycine max] gi|356513598|ref|XP_003525499.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 24 | 24 | – | – | |
| Phobius | 1 | 7 | 7 | – | – | |
| TMHMM | 5 | 27 | 23 | – | – | |
| Phobius | 8 | 19 | 12 | – | – | |
| Phobius | 20 | 24 | 5 | – | – | |
| Phobius | 25 | 47 | 23 | – | – | |
| TMHMM | 47 | 69 | 23 | – | – | |
| Phobius | 48 | 69 | 22 | – | – | |
| Phobius | 70 | 303 | 234 | – | – | |
| PANTHER | 137 | 224 | 88 | 2.00E-22 | – | |
| PANTHER | 137 | 224 | 88 | 2.00E-22 | – | |
| SUPERFAMILY | 140 | 207 | 68 | 5.55E-21 | – | |
| Gene3D | 154 | 202 | 49 | 3.40E-16 | ||
| CDD | 157 | 202 | 46 | 1.13E-11 | – | |
| Pfam | 157 | 199 | 43 | 7.60E-14 | ||
| ProSiteProfiles | 158 | 199 | 42 | 13.035 | ||
| SMART | 158 | 198 | 41 | 7.90E-07 | ||
| MobiDBLite | 259 | 286 | 28 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of Lj4g3v1512530.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj4g3v1512530.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.