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Lj4g3v1534900.1

Overview

Field Value
Gene ID Lj4g3v1534900
Transcript ID Lj4g3v1534900.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: U-box domain-containing protein 19-like [Glycine max] gi|356565018|ref|XP_003550742.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR23315
6 680 675 0 –
PANTHER
PTHR23315:SF116
6 680 675 0 –
ProSiteProfiles
PS51698
283 357 75 38.215
IPR003613
SUPERFAMILY
SSF57850
284 357 74 2.54E-27 –
Pfam
PF04564
285 354 70 4.80E-20
IPR003613
Gene3D
G3DSA:3.30.40.10
285 355 71 1.30E-29
IPR013083
SMART
SM00504
287 350 64 2.70E-29
IPR003613
Gene3D
G3DSA:1.25.10.10
388 670 283 2.40E-35
IPR011989
SUPERFAMILY
SSF48371
396 672 277 2.24E-30
IPR016024
SMART
SM00185
415 461 47 0.54
IPR000225
CDD
cd00020
423 540 118 4.62E-09 –
ProSiteProfiles
PS50176
427 474 48 10.447
IPR000225
SMART
SM00185
462 503 42 41
IPR000225
CDD
cd00020
514 629 116 2.42E-06 –
SMART
SM00185
546 587 42 0.1
IPR000225
ProSiteProfiles
PS50176
557 600 44 9.012
IPR000225

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of
GO:0016567
Biological process Protein ubiquitination The process in which one or more ubiquitin groups are added to a protein.
Subterm of

Genome browser

LORE1 insertions 17

Expression data

Expression pattern

Expression pattern of Lj4g3v1534900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1534900.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.