Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj4g3v1784860.1

Overview

Field Value
Gene ID Lj4g3v1784860
Transcript ID Lj4g3v1784860.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: single-stranded DNA-binding protein, mitochondrial-like [Cicer arietinum] gi|502122587|ref|XP_004497818.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10302:SF3
1 196 196 2.20E-96 –
SignalP
SignalP-TM_GRAM_POSITIVE
1 11 11 – –
PANTHER
PTHR10302
1 196 196 2.20E-96
IPR011344
MobiDBLite
mobidb-lite
20 58 39 – –
Gene3D
G3DSA:2.40.50.140
71 192 122 2.10E-19 –
SUPERFAMILY
SSF50249
71 182 112 6.85E-15
IPR012340
ProSiteProfiles
PS50935
72 187 116 13.439
IPR000424
Pfam
PF00436
74 181 108 5.50E-18
IPR000424
CDD
cd04496
76 182 107 2.25E-13 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003697
Molecular function Single-stranded DNA binding Interacting selectively and non-covalently with single-stranded DNA.
Subterm of
GO:0006260
Biological process DNA replication The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj4g3v1784860.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1784860.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.