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Lj4g3v1787050.2

Overview

Field Value
Gene ID Lj4g3v1787050
Transcript ID Lj4g3v1787050.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: DNA mismatch repair protein MSH2-like [Cicer arietinum] gi|502151706|ref|XP_004508573.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR11361
1 265 265 3.10E-152 –
Pfam
PF00488
1 192 192 2.20E-75
IPR000432
SMART
SM00534
1 189 189 2.20E-104
IPR000432
SUPERFAMILY
SSF52540
1 193 193 6.77E-39
IPR027417
Gene3D
G3DSA:3.40.50.300
1 192 192 1.80E-58
IPR027417
PANTHER
PTHR11361:SF35
1 265 265 3.10E-152
IPR032642
ProSitePatterns
PS00486
72 88 17 –
IPR000432
Coils
Coil
245 265 21 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003677
Molecular function DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006298
Biological process Mismatch repair A system for the correction of errors in which an incorrect base, which cannot form hydrogen bonds with the corresponding base in the parent strand, is incorporated into the daughter strand. The mismatch repair system promotes genomic fidelity by repairing base-base mismatches, insertion-deletion loops and heterologies generated during DNA replication and recombination.
Subterm of
GO:0030983
Molecular function Mismatched DNA binding Interacting selectively and non-covalently with double-stranded DNA containing one or more mismatches.
Subterm of
GO:0032300
Cellular component Mismatch repair complex Any complex formed of proteins that act in mismatch repair.
Subterm of

Genome browser

LORE1 insertions 83

Expression data

Expression pattern

Expression pattern of Lj4g3v1787050.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj4g3v1787050.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.